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Cstdc1 Gene Detail
Summary
  • Symbol
    Cstdc1
  • Name
    cystatin domain containing 1
  • Synonyms
    8030411F24Rik, CstSC, cystatin SC
  • Feature Type
    protein coding gene
  • IDs
    MGI:1925859
    NCBI Gene: 78609
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:148623929-148627856 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 73.55 cM, cytoband H1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    258 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925859
 protein coding gene Chr2:148623929-148627857 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026614
 protein coding gene Chr2:153130960-153134888 (+)
A/J MGP_AJ_G0026578
 protein coding gene Chr2:146897145-146901057 (+)
AKR/J MGP_AKRJ_G0026552
 protein coding gene Chr2:151146510-151150438 (+)
BALB/cJ MGP_BALBcJ_G0026590
 protein coding gene Chr2:147326639-147330551 (+)
C3H/HeJ MGP_C3HHeJ_G0026333
 protein coding gene Chr2:151638030-151641942 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027035
 protein coding gene Chr2:157590358-157594286 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024413
 protein coding gene Chr2:140901762-140905643 (+)
CAST/EiJ MGP_CASTEiJ_G0025794
 protein coding gene Chr2:152033980-152037819 (+)
CBA/J MGP_CBAJ_G0026313
 protein coding gene Chr2:163367016-163370928 (+)
DBA/2J MGP_DBA2J_G0026447
 protein coding gene Chr2:146164190-146168111 (+)
FVB/NJ MGP_FVBNJ_G0026411
 protein coding gene Chr2:144661531-144665443 (+)
LP/J MGP_LPJ_G0026551
 protein coding gene Chr2:153269362-153273290 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026431
 protein coding gene Chr2:167409972-167415189 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027090
 protein coding gene Chr2:151147337-151151249 (+)
PWK/PhJ MGP_PWKPhJ_G0025530
 protein coding gene Chr2:145845215-145849214 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025331
 protein coding gene Chr2:150114978-150118908 (+)
WSB/EiJ MGP_WSBEiJ_G0025868
 protein coding gene Chr2:152095381-152099312 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    722
  • Tissues
    9
  • cDNA Data
    7
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 78609 NCBI Gene Model | MGI Sequence Detail 3928 C57BL/6J ±  kb
transcript NM_030135 RefSeq | MGI Sequence Detail 601 C57BL/6  
polypeptide Q8VII3 UniProt | EBI | MGI Sequence Detail 130 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 7
    Primer pair 2

    Microarray probesets 2
Other
Accession IDs
less
MGI:6275071
References
more
  • Summaries
    All 36
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 13
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory