4930480K15Rik Gene Detail

Summary

• Symbol
  4930480K15Rik
• Name
  RIKEN cDNA 4930480K15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1926050
  NCBI Gene: 78800
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:91168597-91174530 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 60.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  331 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1926050	lncRNA gene	Chr17:91168597-91174530 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015357	unclassified non-coding RNA gene	Chr17:94456822-94462758 (+)
A/J	MGP_AJ_G0015331	unclassified non-coding RNA gene	Chr17:91383621-91389569 (+)
AKR/J	MGP_AKRJ_G0015295	unclassified non-coding RNA gene	Chr17:92895878-92901819 (+)
BALB/cJ	MGP_BALBcJ_G0015295	unclassified non-coding RNA gene	Chr17:91193574-91199524 (+)
C3H/HeJ	MGP_C3HHeJ_G0015119	unclassified non-coding RNA gene	Chr17:93824843-93830783 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015749	unclassified non-coding RNA gene	Chr17:97702033-97707966 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013490	unclassified non-coding RNA gene	Chr17:86333822-86340214 (+)
CAST/EiJ	MGP_CASTEiJ_G0014670	unclassified non-coding RNA gene	Chr17:94728613-94734451 (+)
CBA/J	MGP_CBAJ_G0015098	unclassified non-coding RNA gene	Chr17:101779082-101785030 (+)
DBA/2J	MGP_DBA2J_G0015193	unclassified non-coding RNA gene	Chr17:89747149-89753045 (+)
FVB/NJ	MGP_FVBNJ_G0015200	unclassified non-coding RNA gene	Chr17:89289924-89295842 (+)
LP/J	MGP_LPJ_G0015273	unclassified non-coding RNA gene	Chr17:95223586-95229527 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015226	unclassified non-coding RNA gene	Chr17:101649408-101655364 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015788	unclassified non-coding RNA gene	Chr17:93471639-93477523 (+)
PWK/PhJ	MGP_PWKPhJ_G0014460	unclassified non-coding RNA gene	Chr17:89473362-89479899 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014247	unclassified non-coding RNA gene	Chr17:90248611-90254654 (+)
WSB/EiJ	MGP_WSBEiJ_G0014777	unclassified non-coding RNA gene	Chr17:94349930-94355909 (+)

Homology

• Gene Tree
  4930480K15Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000090160 (Evidence)
• NCBI Gene
  78800

Representative Sequences			Length	Strain/Species
genomic	78800	NCBI Gene Model | MGI Sequence Detail	5934	C57BL/6J
transcript	NR_045463	RefSeq | MGI Sequence Detail	2199	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573