E130215H24Rik Gene Detail

Summary

• Symbol
  E130215H24Rik
• Name
  RIKEN cDNA E130215H24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1926091
  NCBI Gene: 109344
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:150509414-150510852 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 74.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1926091	lncRNA gene	Chr2:150509414-150510855 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015477	unclassified non-coding RNA gene	Chr2:155119895-155121336 (+)
A/J	MGP_AJ_G0015454	unclassified non-coding RNA gene	Chr2:148873280-148874721 (+)
AKR/J	MGP_AKRJ_G0015418	unclassified non-coding RNA gene	Chr2:153195007-153196448 (+)
BALB/cJ	MGP_BALBcJ_G0015417	unclassified non-coding RNA gene	Chr2:149298821-149300262 (+)
C3H/HeJ	MGP_C3HHeJ_G0015240	unclassified non-coding RNA gene	Chr2:153634069-153635510 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015871	unclassified non-coding RNA gene	Chr2:159652603-159654044 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013609	unclassified non-coding RNA gene	Chr2:142740830-142742277 (+)
CAST/EiJ	MGP_CASTEiJ_G0014792	unclassified non-coding RNA gene	Chr2:153875872-153877310 (+)
CBA/J	MGP_CBAJ_G0015221	unclassified non-coding RNA gene	Chr2:165505709-165507150 (+)
DBA/2J	MGP_DBA2J_G0015315	unclassified non-coding RNA gene	Chr2:148113249-148114690 (+)
FVB/NJ	MGP_FVBNJ_G0015322	unclassified non-coding RNA gene	Chr2:146574122-146575563 (+)
LP/J	MGP_LPJ_G0015393	unclassified non-coding RNA gene	Chr2:155256803-155258244 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015346	unclassified non-coding RNA gene	Chr2:169619281-169620719 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015911	unclassified non-coding RNA gene	Chr2:153132685-153134126 (+)
PWK/PhJ	MGP_PWKPhJ_G0014580	unclassified non-coding RNA gene	Chr2:147749320-147750759 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014368	unclassified non-coding RNA gene	Chr2:152058098-152059538 (+)
WSB/EiJ	MGP_WSBEiJ_G0014899	unclassified non-coding RNA gene	Chr2:154098238-154099679 (+)

Homology

• Gene Tree
  E130215H24Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving E130215H24Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000087406 (Evidence)
• NCBI Gene
  109344

Representative Sequences			Length	Strain/Species
genomic	109344	NCBI Gene Model | MGI Sequence Detail	1439	C57BL/6J
transcript	NR_040331	RefSeq | MGI Sequence Detail	936	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for E130215H24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr20706	Chr2:150509305-150509341 (+)	-91 bp