B430010I23Rik Gene Detail

Summary

• Symbol
  B430010I23Rik
• Name
  RIKEN cDNA B430010I23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1926099
  NCBI Gene: 78849
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:41470775-41477253 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 23.89 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  348 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1926099	lncRNA gene	Chr8:41470505-41477253 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015710	unclassified non-coding RNA gene	Chr8:39849510-39856220 (+)
A/J	MGP_AJ_G0015688	unclassified non-coding RNA gene	Chr8:38328397-38335105 (+)
AKR/J	MGP_AKRJ_G0015651	unclassified non-coding RNA gene	Chr8:39488124-39494834 (+)
BALB/cJ	MGP_BALBcJ_G0015649	unclassified non-coding RNA gene	Chr8:38449124-38455832 (+)
C3H/HeJ	MGP_C3HHeJ_G0015471	unclassified non-coding RNA gene	Chr8:39868240-39874949 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016104	unclassified non-coding RNA gene	Chr8:41361030-41367456 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013833	unclassified non-coding RNA gene	Chr8:34989789-34996371 (+)
CAST/EiJ	MGP_CASTEiJ_G0015026	unclassified non-coding RNA gene	Chr8:39376535-39384463 (+)
CBA/J	MGP_CBAJ_G0015452	unclassified non-coding RNA gene	Chr8:43072665-43079373 (+)
DBA/2J	MGP_DBA2J_G0015548	unclassified non-coding RNA gene	Chr8:38163672-38170381 (+)
FVB/NJ	MGP_FVBNJ_G0015554	unclassified non-coding RNA gene	Chr8:37746901-37753611 (+)
LP/J	MGP_LPJ_G0015628	unclassified non-coding RNA gene	Chr8:39891761-39898469 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015576	unclassified non-coding RNA gene	Chr8:42833793-42840503 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016146	unclassified non-coding RNA gene	Chr8:39642837-39649344 (+)
PWK/PhJ	MGP_PWKPhJ_G0014808	unclassified non-coding RNA gene	Chr8:37708813-37715699 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014597	unclassified non-coding RNA gene	Chr8:38802090-38808916 (+)
WSB/EiJ	MGP_WSBEiJ_G0015131	unclassified non-coding RNA gene	Chr8:39851568-39858265 (+)

Homology

• Gene Tree
  B430010I23Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000084960 (Evidence)
• NCBI Gene
  78849

Representative Sequences			Length	Strain/Species
genomic	78849	NCBI Gene Model | MGI Sequence Detail	6479	C57BL/6J
transcript	NR_015457	RefSeq | MGI Sequence Detail	2079	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 6

References

• Summaries
  All 9
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for B430010I23Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr77084	Chr8:41470767-41470781 (+)	-1 bp