Smt3h2-ps2 Pseudogene Detail

Summary

• Symbol
  Smt3h2-ps2
• Name
  SMT3 suppressor of mif two 3 homolog 2, pseudogene 2 (S. cerevisiae)
• Synonyms
  ENSMUSG00000066171

• Feature Type
  pseudogene
• IDs
  MGI:1926284
  NCBI Gene: 100043590
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:126997150-126997437 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 69.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1926284	pseudogene	Chr7:126997057-126998195 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014013	pseudogene	Chr7:131744971-131745258 (+)
A/J	MGP_AJ_G0014033	pseudogene	Chr7:128243079-128243366 (+)
AKR/J	MGP_AKRJ_G0013967	pseudogene	Chr7:131553624-131553911 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0013824	pseudogene	Chr7:131443699-131443986 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014422	pseudogene	Chr7:136882977-136883264 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0013805	pseudogene	Chr7:141498488-141498775 (+)
DBA/2J	MGP_DBA2J_G0013882	pseudogene	Chr7:126222730-126223693 (+)
FVB/NJ	MGP_FVBNJ_G0013883	pseudogene	Chr7:126065041-126065328 (+)
LP/J	MGP_LPJ_G0013962	pseudogene	Chr7:133220568-133220855 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013909	pseudogene	Chr7:142623079-142623366 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014388	pseudogene	Chr7:130519281-130519568 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Smt3h2-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000074184 (Evidence)
• NCBI Gene
  100043590

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000074184	Ensembl Gene Model | MGI Sequence Detail	288	C57BL/6J
transcript	ENSMUST00000122370	Ensembl | MGI Sequence Detail	288	Not Applicable

Other
Accession IDs

MGI:3641711

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:52460 Chen A, et al., Characterization of mouse ubiquitin-like SMT3A and SMT3B cDNAs and gene/pseudogenes. Biochem Mol Biol Int. 1998 Dec;46(6):1161-74
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14