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Scamp5 Gene Detail
Summary
  • Symbol
    Scamp5
  • Name
    secretory carrier membrane protein 5
  • Synonyms
    Sc5
  • Feature Type
    protein coding gene
  • IDs
    MGI:1928948
    NCBI Gene: 56807
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:57348610-57375343 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 31.05 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    762 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1928948
 protein coding gene Chr9:57348610-57375343 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034865
 protein coding gene Chr9:56645705-56674032 (-)
A/J MGP_AJ_G0034846
 protein coding gene Chr9:54823251-54850068 (-)
AKR/J MGP_AKRJ_G0034775
 protein coding gene Chr9:56083425-56110459 (-)
BALB/cJ MGP_BALBcJ_G0034838
 protein coding gene Chr9:54601547-54628948 (-)
C3H/HeJ MGP_C3HHeJ_G0034548
 protein coding gene Chr9:56563925-56590627 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035357
 protein coding gene Chr9:58235398-58262121 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032268
 protein coding gene Chr9:54137571-54163379 (-)
CAST/EiJ MGP_CASTEiJ_G0033869
 protein coding gene Chr9:56649126-56681752 (-)
CBA/J MGP_CBAJ_G0034519
 protein coding gene Chr9:60263934-60290976 (-)
DBA/2J MGP_DBA2J_G0034678
 protein coding gene Chr9:54691050-54719745 (-)
FVB/NJ MGP_FVBNJ_G0034620
 protein coding gene Chr9:53913757-53943911 (-)
LP/J MGP_LPJ_G0034761
 protein coding gene Chr9:56946005-56973789 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034663
 protein coding gene Chr9:61762980-61789767 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035379
 protein coding gene Chr9:56104496-56131236 (-)
PWK/PhJ MGP_PWKPhJ_G0033574
 protein coding gene Chr9:54726373-54753933 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033408
 protein coding gene Chr9:56394857-56424714 (-)
WSB/EiJ MGP_WSBEiJ_G0033982
 protein coding gene Chr9:56035048-56063906 (-)



Homology
more
  • Human Ortholog
    SCAMP5, secretory carrier membrane protein 5
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SCAMP5, secretory carrier membrane protein 5
  • Links
    NCBI Gene ID: 192683
    neXtProt AC: NX_Q8TAC9
    UniProt: Q8TAC9

  • Chr Location
    15q24.2; chr15:74957219-75021495 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with Scamp5 mouse models

Human Disease Mouse Models
      
IDs
 View 1 model
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    15 phenotypes from 2 alleles in 2 genetic backgrounds
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    29
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    766
  • Tissues
    51
  • cDNA Data
    76
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 56807 NCBI Gene Model | MGI Sequence Detail 26734 C57BL/6J ±  kb
    transcript NM_001301634 RefSeq | MGI Sequence Detail 3364 C57BL/6  
    polypeptide Q9JKD3 UniProt | EBI | MGI Sequence Detail 235 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 77
      cDNA 77

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGI:2143036, MGI:2143337
    References
    more
    • Summaries
      All 40
      Developmental Gene Expression 4
      Diseases 1
      Gene Ontology 8
      Phenotypes 12
    • Earliest
      J:66325 Fernandez-Chacon R, et al., Novel SCAMPs lacking NPF repeats: ubiquitous and synaptic vesicle-specific forms implicate SCAMPs in multiple membrane-trafficking functions. J Neurosci. 2000 Nov 1;20(21):7941-50
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/05/2024
    MGI 6.24     		The Jackson Laboratory