Gltp MGI Mouse Gene Detail - MGI:1929253 - glycolipid transfer protein

Symbol

Gltp
Name

glycolipid transfer protein
Synonyms

1110001F24Rik

Feature Type

protein coding gene
IDs

MGI:1929253
NCBI Gene: 56356
Alliance

gene page
Transcription Start Sites

8 TSS

Sequence Map

Chr5:114807551-114828996 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 5, 55.99 cM
Mapping Data

2 experiments

SNPs within 2kb

718 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1929253	protein coding gene	Chr5:114807459-114829045 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0029942	protein coding gene	Chr5:117436418-117457601 (-)
A/J	MGP_AJ_G0029907	protein coding gene	Chr5:112809934-112830775 (-)
AKR/J	MGP_AKRJ_G0029845	protein coding gene	Chr5:116386727-116409330 (-)
BALB/cJ	MGP_BALBcJ_G0029918	protein coding gene	Chr5:114176647-114196920 (-)
C3H/HeJ	MGP_C3HHeJ_G0029638	protein coding gene	Chr5:116898415-116918775 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0030372	protein coding gene	Chr5:121963718-121985590 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0027600	protein coding gene	Chr5:107633493-107653898 (-)
CAST/EiJ	MGP_CASTEiJ_G0029046	protein coding gene	Chr5:115834119-115856333 (-)
CBA/J	MGP_CBAJ_G0029605	protein coding gene	Chr5:126618835-126639257 (-)
DBA/2J	MGP_DBA2J_G0029755	protein coding gene	Chr5:112877849-112898634 (-)
FVB/NJ	MGP_FVBNJ_G0029712	protein coding gene	Chr5:111687328-111708453 (-)
LP/J	MGP_LPJ_G0029844	protein coding gene	Chr5:118002236-118024285 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0029743	protein coding gene	Chr5:131015952-131036233 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0030413	protein coding gene	Chr5:115863535-115884105 (-)
PWK/PhJ	MGP_PWKPhJ_G0028760	protein coding gene	Chr5:111532543-111553008 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0028598	protein coding gene	Chr5:113411273-113433360 (-)
WSB/EiJ	MGP_WSBEiJ_G0029122	protein coding gene	Chr5:116452545-116474076 (-)

Human Ortholog

GLTP, glycolipid transfer protein

Vertebrate Orthologs

4

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

GLTP, glycolipid transfer protein
Links

HGNC:24867

NCBI Gene ID: 51228

neXtProt AC: NX_Q9NZD2

UniProt: Q9NZD2
Chr Location

12q24.11; chr12:109850945-109880541 (-) GRCh38

MGI Vertebrate Homology

Gltp stringent orthology
1 human;1 mouse;1 rat;2 zebrafish
HCOP

vertebrate homology predictions: GLTP
Gene Tree

Gltp

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Phenotype Summary

11 phenotype references

All Mutations and Alleles

13
Chemically induced (other)

1
Endonuclease-mediated

2
Gene trapped

7
Radiation induced

1
Targeted

2
Genomic Mutations

2 involving Gltp
Find Mice (IMSR)

14 strains or lines available

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All GO Annotations

18
GO References

4

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

722
Tissues

7
cDNA Data

84
Literature Summary

3

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase gltp

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All Sequences

46
RefSeq

2
UniProt

5
CCDS

CCDS19569.1

Ensembl

ENSMUSG00000011884 (Evidence)
NCBI Gene

56356

			Length	Strain/Species	Flank
genomic	56356	NCBI Gene Model \| MGI Sequence Detail	21446	C57BL/6J	± kb
transcript	NM_019821	RefSeq \| MGI Sequence Detail	1622	FVB/N
polypeptide	Q9JL62	UniProt \| EBI \| MGI Sequence Detail	209	Not Applicable

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UniProt

5 Sequences
Protein Ontology

PR:000008053 glycolipid transfer protein

(term hierarchy)
InterPro Domains

IPR014830 Glycolipid transfer protein domain

IPR036497 Glycolipid transfer protein superfamily
GlyGen

Q9JL62 2 sites, 1 N-linked glycan (1 site), 1 O-linked glycan (1 site)

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All nucleic 84

cDNA 84

Microarray probesets 2

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MGI:1914169, MGI:2141279, MGI:2141288

Summaries

All 36

Developmental Gene Expression 3

Gene Ontology 4

Phenotypes 11
Earliest

J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
Latest

J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034

TSS for Gltp:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52723	Chr5:114829077-114829088 (-)	-87 bp
Tssr52722	Chr5:114829035-114829060 (-)	-52 bp
Tssr52721	Chr5:114828967-114829031 (-)	-3 bp
Tssr52720	Chr5:114828925-114828963 (-)	52 bp
Tssr52719	Chr5:114808132-114808173 (-)	20,843 bp
Tssr52718	Chr5:114808114-114808128 (-)	20,875 bp
Tssr52717	Chr5:114807944-114807975 (-)	21,036 bp
Tssr52716	Chr5:114807816-114807820 (-)	21,178 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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