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Popdc3 Gene Detail
Summary
  • Symbol
    Popdc3
  • Name
    popeye domain containing 3
  • Synonyms
    Pop3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1930153
    NCBI Gene: 78977
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:45165401-45194546 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 23.35 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1061 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1930153
 protein coding gene Chr10:45054194-45194548 (+)
129S1/SvImJ MGP_129S1SvImJ_G0017207
 protein coding gene Chr10:44067863-44217240 (+)
A/J MGP_AJ_G0017183
 protein coding gene Chr10:42821710-42965822 (+)
AKR/J MGP_AKRJ_G0017142
 protein coding gene Chr10:43510219-43650165 (+)
BALB/cJ MGP_BALBcJ_G0017144
 protein coding gene Chr10:42868481-43015331 (+)
C3H/HeJ MGP_C3HHeJ_G0016968
 protein coding gene Chr10:43816538-43960886 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017602
 protein coding gene Chr10:45531295-45564112 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015297
 protein coding gene Chr10:40827288-40856598 (+)
CAST/EiJ MGP_CASTEiJ_G0016542
 protein coding gene Chr10:44204943-44234072 (+)
CBA/J MGP_CBAJ_G0016939
 protein coding gene Chr10:47435464-47596440 (+)
DBA/2J MGP_DBA2J_G0017044
 protein coding gene Chr10:42238863-42379082 (+)
FVB/NJ MGP_FVBNJ_G0017038
 protein coding gene Chr10:41742118-41882315 (+)
LP/J MGP_LPJ_G0017119
 protein coding gene Chr10:44092643-44246506 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017067
 protein coding gene Chr10:48096417-48253921 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017638
 protein coding gene Chr10:43498329-43649081 (+)
PWK/PhJ MGP_PWKPhJ_G0016321
 protein coding gene Chr10:42328491-42357105 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016106
 protein coding gene Chr10:43418749-43448350 (+)
WSB/EiJ MGP_WSBEiJ_G0016605
 protein coding gene Chr10:43862846-43891274 (+)



Homology
more
  • Human Ortholog
    POPDC3, popeye domain cAMP effector 3
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    POPDC3, popeye domain cAMP effector 3
  • Synonyms
    bA355M14.1, LGMDR26, POP3
  • Links
    NCBI Gene ID: 64208
    neXtProt AC: NX_Q9HBV1
    UniProt: Q9HBV1

  • Chr Location
    6q21; chr6:105157900-105180014 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with human POPDC3 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    796
  • Tissues
    34
  • cDNA Data
    17
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 78977 NCBI Gene Model | MGI Sequence Detail 29146 C57BL/6J ±  kb
transcript NM_024286 RefSeq | MGI Sequence Detail 1851 ZRU/MplStud  
polypeptide Q9ES81 UniProt | EBI | MGI Sequence Detail 291 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 21
    Genomic 2
    cDNA 18
    Primer pair 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:2143508
References
more
  • Summaries
    All 37
    Developmental Gene Expression 5
    Gene Ontology 3
    Phenotypes 13
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory