Kifc5c-ps Pseudogene Detail

Summary

• Symbol
  Kifc5c-ps
• Name
  kinesin family member C5C, pseudogene
• Synonyms
  Kifc5c, kinesin family c-terminal 5C

• Feature Type
  pseudogene
• IDs
  MGI:2137415
  NCBI Gene: 94118
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr10:117430258-117431787 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 66.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  180 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2137415	pseudogene	Chr10:117429970-117431787 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039655	pseudogene	Chr10:120532518-120534047 (+)
A/J	MGP_AJ_G0039654	pseudogene	Chr10:115798186-115799715 (+)
AKR/J	MGP_AKRJ_G0039579	pseudogene	Chr10:119211389-119212918 (+)
BALB/cJ	MGP_BALBcJ_G0039628	pseudogene	Chr10:116212700-116214073 (+)
C3H/HeJ	MGP_C3HHeJ_G0039291	pseudogene	Chr10:119435249-119437825 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040180	pseudogene	Chr10:124657440-124658002 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036825	pseudogene	Chr10:110349492-110351036 (+)
CAST/EiJ	MGP_CASTEiJ_G0038408	pseudogene	Chr10:119732877-119734406 (+)
CBA/J	MGP_CBAJ_G0039258	pseudogene	Chr10:129585159-129586688 (+)
DBA/2J	MGP_DBA2J_G0039451	pseudogene	Chr10:114962370-114963899 (+)
FVB/NJ	MGP_FVBNJ_G0039407	pseudogene	Chr10:113922336-113923865 (+)
LP/J	MGP_LPJ_G0039494	pseudogene	Chr10:121080953-121082482 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039411	pseudogene	Chr10:132421595-132423124 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040285	pseudogene	Chr10:119274985-119276514 (+)
PWK/PhJ	MGP_PWKPhJ_G0038084	pseudogene	Chr10:115056536-115058185 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037833	pseudogene	Chr10:118054212-118055729 (+)
WSB/EiJ	MGP_WSBEiJ_G0038642	pseudogene	Chr10:119467974-119469503 (+)

Homology

• Gene Tree
  Kifc5c-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Kifc5c-ps
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000043800 (Evidence)
• NCBI Gene
  94118

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000043800	Ensembl Gene Model | MGI Sequence Detail	1530	C57BL/6J
transcript	ENSMUST00000179040	Ensembl | MGI Sequence Detail	1530	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 12

  Developmental Gene Expression 1

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87