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AI597479 Gene Detail
Summary
  • Symbol
    AI597479
  • Name
    expressed sequence AI597479
  • Feature Type
    protein coding gene
  • IDs
    MGI:2138299
    NCBI Gene: 98404
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:43137870-43155106 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 22.27 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    554 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2138299
 protein coding gene Chr1:43137870-43155107 (+)
129S1/SvImJ MGP_129S1SvImJ_G0015978
 protein coding gene Chr1:42065790-42083015 (+)
A/J MGP_AJ_G0015962
 protein coding gene Chr1:40805507-40822731 (+)
AKR/J MGP_AKRJ_G0015917
 protein coding gene Chr1:41339465-41356696 (+)
BALB/cJ MGP_BALBcJ_G0015916
 protein coding gene Chr1:40480498-40497723 (+)
C3H/HeJ MGP_C3HHeJ_G0015749
 protein coding gene Chr1:41720297-41737521 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016369
 protein coding gene Chr1:43799433-43816655 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014091
 protein coding gene Chr1:37638085-37655309 (+)
CAST/EiJ MGP_CASTEiJ_G0015330
 protein coding gene Chr1:41707069-41724409 (+)
CBA/J MGP_CBAJ_G0015721
 protein coding gene Chr1:45079951-45097207 (+)
DBA/2J MGP_DBA2J_G0015822
 protein coding gene Chr1:40081648-40099375 (+)
FVB/NJ MGP_FVBNJ_G0015824
 protein coding gene Chr1:39609446-39627066 (+)
LP/J MGP_LPJ_G0015892
 protein coding gene Chr1:42411478-42430182 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015844
 protein coding gene Chr1:47073096-47090349 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016416
 protein coding gene Chr1:41552499-41569728 (+)
PWK/PhJ MGP_PWKPhJ_G0015113
 protein coding gene Chr1:39965794-39983724 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014895
 protein coding gene Chr1:41546562-41565189 (+)
WSB/EiJ MGP_WSBEiJ_G0015392
 protein coding gene Chr1:41589129-41609431 (+)



Homology
more
  • Human Ortholog
    C2orf49, chromosome 2 open reading frame 49
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    C2orf49, chromosome 2 open reading frame 49
  • Synonyms
    asw
  • Links
    NCBI Gene ID: 79074
    neXtProt AC: NX_Q9BVC5
    UniProt: Q9BVC5

  • Chr Location
    2q12.2; chr2:105337532-105385899 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    5
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 98404 NCBI Gene Model | MGI Sequence Detail 17237 C57BL/6J ±  kb
transcript NM_133818 RefSeq | MGI Sequence Detail 3476 FVB/N  
polypeptide Q922M7 UniProt | EBI | MGI Sequence Detail 232 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 3
References
more
  • Summaries
    All 27
    Gene Ontology 5
    Phenotypes 6
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory