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Khdc1b Gene Detail
Summary
  • Symbol
    Khdc1b
  • Name
    KH domain containing 1B
  • Synonyms
    Khdc1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2138477
    NCBI Gene: 98582
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr1:21453780-21456597 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 6.64 cM, cytoband A4
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    266 from dbSNP Build 142
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2138477
 protein coding gene Chr1:21453780-21456608 (+)
129S1/SvImJ MGP_129S1SvImJ_G0015880
 protein coding gene Chr1:19065632-19068285 (+)
A/J MGP_AJ_G0015861
 protein coding gene Chr1:18815749-18818133 (+)
AKR/J MGP_AKRJ_G0015818
 protein coding gene Chr1:18888796-18904879 (+)
BALB/cJ MGP_BALBcJ_G0015817
 protein coding gene Chr1:18510698-18514693 (+)
C3H/HeJ MGP_C3HHeJ_G0015651
 protein coding gene Chr1:18918876-18922076 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016269
 protein coding gene Chr1:19907716-19945801 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0015230
 protein coding gene Chr1:18990598-18998092 (+)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0015726
 protein coding gene Chr1:18095666-18098482 (+)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0015746
 protein coding gene Chr1:21339909-21342332 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016318
 protein coding gene Chr1:18842575-18845391 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    KHDC1, KH domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    KHDC1, KH domain containing 1
  • Synonyms
    bA257K9.4, C6orf147, C6orf148, Em:AC019205.8, NDG1
  • Links
    NCBI Gene ID: 80759
    neXtProt AC: NX_Q4VXA5
    UniProt: Q4VXA5

  • Chr Location
    6q13; chr6:73241314-73310378 (-)  GRCh38
  • Human Ortholog
    KHDC1L, KH domain containing 1 like
  • Links
    NCBI Gene ID: 100129128
    neXtProt AC: NX_Q5JSQ8
    UniProt: Q5JSQ8

  • Chr Location
    6q13; chr6:73223544-73225770 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    754
  • Tissues
    36
  • cDNA Data
    54
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000085079 Ensembl Gene Model | MGI Sequence Detail 2818 C57BL/6J ±  kb
transcript ENSMUST00000147615 Ensembl | MGI Sequence Detail 2236 Not Applicable  
polypeptide ENSMUSP00000120275 Ensembl | MGI Sequence Detail 126 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 57
    cDNA 54
    Primer pair 2
    Other 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:2138408, MGI:2138704, MGI:2138714
References
more
  • Summaries
    All 24
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 2
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory