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Slc4a11 Gene Detail
Summary
  • Symbol
    Slc4a11
  • Name
    solute carrier family 4, sodium bicarbonate transporter-like, member 11
  • Feature Type
    protein coding gene
  • IDs
    MGI:2138987
    NCBI Gene: 269356
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:130526033-130539439 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 63.24 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    379 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2138987
 protein coding gene Chr2:130526027-130539439 (-)
129S1/SvImJ MGP_129S1SvImJ_G0026515
 protein coding gene Chr2:134158019-134173150 (-)
A/J MGP_AJ_G0026479
 protein coding gene Chr2:128726557-128740775 (-)
AKR/J MGP_AKRJ_G0026454
 protein coding gene Chr2:132442011-132455216 (-)
BALB/cJ MGP_BALBcJ_G0026491
 protein coding gene Chr2:129078841-129092558 (-)
C3H/HeJ MGP_C3HHeJ_G0026234
 protein coding gene Chr2:132871229-132885282 (-)
C57BL/6NJ MGP_C57BL6NJ_G0026936
 protein coding gene Chr2:138306094-138319304 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024313
 protein coding gene Chr2:123467986-123481355 (-)
CAST/EiJ MGP_CASTEiJ_G0025695
 protein coding gene Chr2:133132531-133145968 (-)
CBA/J MGP_CBAJ_G0026214
 protein coding gene Chr2:143422060-143443911 (-)
DBA/2J MGP_DBA2J_G0026348
 protein coding gene Chr2:128111567-128124762 (-)
FVB/NJ MGP_FVBNJ_G0026312
 protein coding gene Chr2:126744450-126758172 (-)
LP/J MGP_LPJ_G0026453
 protein coding gene Chr2:134400087-134413640 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0026332
 protein coding gene Chr2:147263775-147281510 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0026991
 protein coding gene Chr2:132392897-132407267 (-)
PWK/PhJ MGP_PWKPhJ_G0025431
 protein coding gene Chr2:127678239-127691687 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025233
 protein coding gene Chr2:131533087-131547601 (-)
WSB/EiJ MGP_WSBEiJ_G0025769
 protein coding gene Chr2:133323293-133336981 (-)



Homology
more
  • Human Ortholog
    SLC4A11, solute carrier family 4 member 11
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLC4A11, solute carrier family 4 member 11
  • Synonyms
    BTR1, CDPD1, CHED, CHED2, dJ794I6.2, NABC1
  • Links
    NCBI Gene ID: 83959
    neXtProt AC: NX_Q8NBS3
    UniProt: Q8NBS3

  • Chr Location
    20p13; chr20:3227417-3239559 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with Slc4a11 mouse models; 3 with human SLC4A11 associations

Human Disease Mouse Models
      
IDs
 View 1 model
      
IDs
IDs
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    30 phenotypes from 3 alleles in 3 genetic backgrounds
    4 images
    20 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a gene trapped allele show a collapsed vestibular labyrinth, reduced brainstem auditory potentials, and altered corneal epithelium. Mice homozygous for a reporter allele show corneal endothelial dystrophy, polyuria, natriuresis, urinehypoosmolarity and impaired hearing.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    50
  • GO References
    11
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    737
  • Tissues
    30
  • cDNA Data
    18
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000074796 Ensembl Gene Model | MGI Sequence Detail 13407 C57BL/6J ±  kb
    transcript ENSMUST00000099362 Ensembl | MGI Sequence Detail 3196 Not Applicable  
    polypeptide ENSMUSP00000096963 Ensembl | MGI Sequence Detail 862 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 19
      cDNA 18
      Primer pair 1

      Microarray probesets 4
    References
    more
    • Summaries
      All 54
      Developmental Gene Expression 2
      Diseases 1
      Gene Ontology 11
      Phenotypes 20
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:352052 Murugan S, et al., Characterization of a Novel Mouse Model for Fuchs Endothelial Corneal Dystrophy. Invest Ophthalmol Vis Sci. 2024 Apr 1;65(4):18
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory