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AI480526 Gene Detail
Summary
  • Symbol
    AI480526
  • Name
    expressed sequence AI480526
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2140910
    NCBI Gene: 100675
  • Alliance
    gene page
  • Transcription Start Sites
    12 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:123271784-123281539 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 62.79 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    154 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2140910
 lncRNA gene Chr5:123271784-123281539 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006799
 lincRNA gene Chr5:126820317-126828255 (-)
A/J MGP_AJ_G0006793
 lincRNA gene Chr5:121567180-121575111 (-)
AKR/J MGP_AKRJ_G0006763
 lincRNA gene Chr5:125482793-125490734 (-)
BALB/cJ MGP_BALBcJ_G0006769
 lincRNA gene Chr5:122901556-122909478 (-)
C3H/HeJ MGP_C3HHeJ_G0006714
 lincRNA gene Chr5:126100668-126116364 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006934
 lincRNA gene Chr5:131713767-131721743 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006189
 lincRNA gene Chr5:116150499-116158421 (-)
CAST/EiJ MGP_CASTEiJ_G0006637
 lincRNA gene Chr5:125211079-125220408 (-)
CBA/J MGP_CBAJ_G0006696
 lincRNA gene Chr5:136874560-136885725 (-)
DBA/2J MGP_DBA2J_G0006716
 lincRNA gene Chr5:121613194-121621167 (-)
FVB/NJ MGP_FVBNJ_G0006740
 lincRNA gene Chr5:120614541-120622478 (-)
LP/J MGP_LPJ_G0006800
 lincRNA gene Chr5:127355709-127364513 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006723
 lincRNA gene Chr5:140559235-140568087 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006936
 lincRNA gene Chr5:125078056-125088086 (-)
PWK/PhJ MGP_PWKPhJ_G0006576
 lincRNA gene Chr5:120400881-120408954 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006482
 lincRNA gene Chr5:122775402-122783296 (-)
WSB/EiJ MGP_WSBEiJ_G0006688
 lincRNA gene Chr5:125746672-125756861 (-)



Homology
more
  • Human Ortholog
    LINC01089, long intergenic non-protein coding RNA 1089
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LINC01089, long intergenic non-protein coding RNA 1089
  • Synonyms
    LIMT
  • Links
    NCBI Gene ID: 338799

  • Chr Location
    12q24.31; chr12:121795267-121803906 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    22
  • Chemically induced (other)
    1
  • Gene trapped
    19
  • Radiation induced
    1
  • Targeted
    1
  • Genomic Mutations
    2 involving AI480526
  • Find Mice (IMSR)
    159 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    15
Sequences &
Gene Models
less
  • All Sequences
    278
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000090086 Ensembl Gene Model | MGI Sequence Detail 9756 C57BL/6J ±  kb
transcript ENSMUST00000242362 Ensembl | MGI Sequence Detail 5088 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 2
References
more
  • Summaries
    All 18
    Phenotypes 8
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory