About   Help   FAQ
AI506816 Gene Detail
Summary
  • Symbol
    AI506816
  • Name
    expressed sequence AI506816
  • Synonyms
    BC023969
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2140929
    NCBI Gene: 433855
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:23903294-23917684 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 10.39 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    464 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2140929
 lncRNA gene Chr5:23897259-23917684 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015590
 unclassified non-coding RNA gene Chr5:21387498-21388478 (-)
A/J MGP_AJ_G0015266
 unclassified non-coding RNA gene Chr15:30281817-30282799 (+)
AKR/J MGP_AKRJ_G0015229
 unclassified non-coding RNA gene Chr15:31088622-31101510 (+)
BALB/cJ MGP_BALBcJ_G0015230
 unclassified non-coding RNA gene Chr15:30277679-30278660 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0015982
 unclassified non-coding RNA gene Chr5:22842907-22843888 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013717
 unclassified non-coding RNA gene Chr5:18633907-18634863 (-)
CAST/EiJ MGP_CASTEiJ_G0014906
 unclassified non-coding RNA gene Chr5:20773788-20776564 (-)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0015425
 unclassified non-coding RNA gene Chr5:20935965-20947418 (-)
FVB/NJ MGP_FVBNJ_G0015135
 unclassified non-coding RNA gene Chr15:29568188-29570772 (+)
LP/J MGP_LPJ_G0015506
 unclassified non-coding RNA gene Chr5:21750384-21751364 (-)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0016024
 unclassified non-coding RNA gene Chr5:21093080-21111968 (-)
PWK/PhJ MGP_PWKPhJ_G0014691
 unclassified non-coding RNA gene Chr5:20019326-20020307 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014479
 unclassified non-coding RNA gene Chr5:20482844-20483827 (-)
WSB/EiJ MGP_WSBEiJ_G0014712
 unclassified non-coding RNA gene Chr15:31261527-31265876 (+)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
  • All Mutations and Alleles
    25
  • Chemically induced (other)
    2
  • Gene trapped
    21
  • Radiation induced
    1
  • Spontaneous
    1
  • Genomic Mutations
    4 involving AI506816
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    708
  • Tissues
    2
  • cDNA Data
    35
  • Literature Summary
    3
Sequences &
Gene Models
less
  • All Sequences
    43
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000105987 Ensembl Gene Model | MGI Sequence Detail 14391 C57BL/6J ±  kb
transcript ENSMUST00000244629 Ensembl | MGI Sequence Detail 2837 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 35
    cDNA 35

    Microarray probesets 4
Other
Accession IDs
less
MGI:3039632
References
more
  • Summaries
    All 34
    Developmental Gene Expression 3
    Diseases 1
    Gene Ontology 1
    Phenotypes 13
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:223994 Zangrando J, et al., Identification of candidate long non-coding RNAs in response to myocardial infarction. BMC Genomics. 2014;15:460
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory