AV356131 Gene Detail

Summary

• Symbol
  AV356131
• Name
  expressed sequence AV356131

• Feature Type
  lncRNA gene
• IDs
  MGI:2142184
  NCBI Gene: 101807
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:116042777-116043561 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2142184	lncRNA gene	Chr7:116042777-116043561 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004767	bidirectional promoter lncRNA gene	Chr7:120183865-120184615 (+)
A/J	MGP_AJ_G0004748	bidirectional promoter lncRNA gene	Chr7:117164024-117164773 (+)
AKR/J	MGP_AKRJ_G0004727	bidirectional promoter lncRNA gene	Chr7:120141613-120142362 (+)
BALB/cJ	MGP_BALBcJ_G0004730	bidirectional promoter lncRNA gene	Chr7:116888800-116889549 (+)
C3H/HeJ	MGP_C3HHeJ_G0004678	bidirectional promoter lncRNA gene	Chr7:120063986-120064735 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004880	bidirectional promoter lncRNA gene	Chr7:125002440-125003189 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004317	bidirectional promoter lncRNA gene	Chr7:118672896-118673642 (+)
CAST/EiJ	MGP_CASTEiJ_G0004632	bidirectional promoter lncRNA gene	Chr7:111758314-111759064 (+)
CBA/J	MGP_CBAJ_G0004671	bidirectional promoter lncRNA gene	Chr7:129137575-129138324 (+)
DBA/2J	MGP_DBA2J_G0004689	bidirectional promoter lncRNA gene	Chr7:115213274-115214023 (+)
FVB/NJ	MGP_FVBNJ_G0004708	bidirectional promoter lncRNA gene	Chr7:115073253-115074002 (+)
LP/J	MGP_LPJ_G0004768	bidirectional promoter lncRNA gene	Chr7:121667234-121667984 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004693	bidirectional promoter lncRNA gene	Chr7:130761847-130763087 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004883	bidirectional promoter lncRNA gene	Chr7:119127422-119128171 (+)
PWK/PhJ	MGP_PWKPhJ_G0004585	bidirectional promoter lncRNA gene	Chr7:108096205-108096945 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004518	bidirectional promoter lncRNA gene	Chr7:105861910-105862659 (+)
WSB/EiJ	MGP_WSBEiJ_G0004677	bidirectional promoter lncRNA gene	Chr7:119999989-120000738 (+)

Homology

• Gene Tree
  AV356131
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000108461 (Evidence)
• NCBI Gene
  101807

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108461	Ensembl Gene Model | MGI Sequence Detail	785	C57BL/6J
transcript	ENSMUST00000206201	Ensembl | MGI Sequence Detail	785	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for AV356131:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68691	Chr7:116042804-116042828 (+)	39 bp