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AI593442 Gene Detail
Summary
  • Symbol
    AI593442
  • Name
    expressed sequence AI593442
  • Feature Type
    protein coding gene
  • IDs
    MGI:2143099
    NCBI Gene: 330941
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:52584342-52591080 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 29.12 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    140 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2143099
 protein coding gene Chr9:52584332-52593434 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034806
 protein coding gene Chr9:51673226-51679599 (-)
A/J MGP_AJ_G0034787
 protein coding gene Chr9:50061175-50067558 (-)
AKR/J MGP_AKRJ_G0034715
 protein coding gene Chr9:51119676-51126030 (-)
BALB/cJ MGP_BALBcJ_G0034779
 protein coding gene Chr9:49817578-49823947 (-)
C3H/HeJ MGP_C3HHeJ_G0034489
 protein coding gene Chr9:51608727-51615108 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035298
 protein coding gene Chr9:53106053-53112437 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032211
 protein coding gene Chr9:49488493-49494880 (-)
CAST/EiJ MGP_CASTEiJ_G0033811
 protein coding gene Chr9:51602991-51609392 (-)
CBA/J MGP_CBAJ_G0034460
 protein coding gene Chr9:54936415-54942798 (-)
DBA/2J MGP_DBA2J_G0034619
 protein coding gene Chr9:49910698-49917067 (-)
FVB/NJ MGP_FVBNJ_G0034561
 protein coding gene Chr9:49116963-49123345 (-)
LP/J MGP_LPJ_G0034701
 protein coding gene Chr9:51996536-52002920 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034604
 protein coding gene Chr9:56532354-56538738 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035320
 protein coding gene Chr9:51122887-51129262 (-)
PWK/PhJ MGP_PWKPhJ_G0033515
 protein coding gene Chr9:49917225-49923639 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033351
 protein coding gene Chr9:51397397-51403778 (-)
WSB/EiJ MGP_WSBEiJ_G0033923
 protein coding gene Chr9:51134990-51141372 (-)



Homology
more
  • Human Ortholog
    C11orf87, chromosome 11 open reading frame 87
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    C11orf87, chromosome 11 open reading frame 87
  • Synonyms
    LOH11CR1A, NEURIM1
  • Links
    NCBI Gene ID: 399947
    neXtProt AC: NX_Q6NUJ2
    UniProt: Q6NUJ2

  • Chr Location
    11q22.3; chr11:109422190-109429167 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    825
  • Tissues
    100
  • cDNA Data
    7
  • Literature Summary
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000078307 Ensembl Gene Model | MGI Sequence Detail 6739 C57BL/6J ±  kb
transcript ENSMUST00000213937 Ensembl | MGI Sequence Detail 5674 Not Applicable  
polypeptide ENSMUSP00000149532 Ensembl | MGI Sequence Detail 199 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 3
References
more
  • Summaries
    All 22
    Developmental Gene Expression 4
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory