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Slc6a20a Gene Detail
Summary
  • Symbol
    Slc6a20a
  • Name
    solute carrier family 6 (neurotransmitter transporter), member 20A
  • Synonyms
    A730081N20Rik, Xtrp3s1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2143217
    NCBI Gene: 102680
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:123465972-123507897 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 74.26 cM, cytoband F
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1171 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2143217
 protein coding gene Chr9:123463835-123507950 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035480
 protein coding gene Chr9:126692718-126736219 (-)
A/J MGP_AJ_G0035461
 protein coding gene Chr9:121842567-121887627 (-)
AKR/J MGP_AKRJ_G0035394
 protein coding gene Chr9:125104224-125155904 (-)
BALB/cJ MGP_BALBcJ_G0035457
 protein coding gene Chr9:121771588-121820867 (-)
C3H/HeJ MGP_C3HHeJ_G0035164
 protein coding gene Chr9:125552904-125600807 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035980
 protein coding gene Chr9:130188341-130237130 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032862
 protein coding gene Chr9:118959227-119001336 (-)
CAST/EiJ MGP_CASTEiJ_G0034469
 protein coding gene Chr9:125553350-125627956 (-)
CBA/J MGP_CBAJ_G0035132
 protein coding gene Chr9:134928780-134982303 (-)
DBA/2J MGP_DBA2J_G0035291
 protein coding gene Chr9:121289944-121333158 (-)
FVB/NJ MGP_FVBNJ_G0035238
 protein coding gene Chr9:120188948-120234864 (-)
LP/J MGP_LPJ_G0035370
 protein coding gene Chr9:126986733-127140552 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035279
 protein coding gene Chr9:135740022-135788298 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035999
 protein coding gene Chr9:125565057-125614888 (-)
PWK/PhJ MGP_PWKPhJ_G0034173
 protein coding gene Chr9:121739788-121783034 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034010
 protein coding gene Chr9:125703717-125727544 (-)
WSB/EiJ MGP_WSBEiJ_G0034589
 protein coding gene Chr9:125411386-125457708 (-)



Homology
more
  • Human Ortholog
    SLC6A20, solute carrier family 6 member 20
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLC6A20, solute carrier family 6 member 20
  • Synonyms
    IMINO, SIT1, XT3, Xtrp3
  • Links
    NCBI Gene ID: 54716
    neXtProt AC: NX_Q9NP91
    UniProt: Q9NP91

  • Chr Location
    3p21.31; chr3:45755449-45796574 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    40
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    730
  • Tissues
    15
  • cDNA Data
    16
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 102680 NCBI Gene Model | MGI Sequence Detail 41926 C57BL/6J ±  kb
transcript NM_139142 RefSeq | MGI Sequence Detail 1894 Not Specified  
polypeptide Q8VDB9 UniProt | EBI | MGI Sequence Detail 592 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 18
    cDNA 16
    Primer pair 2

    Microarray probesets 4
Other
Accession IDs
less
MGI:2443096
References
more
  • Summaries
    All 39
    Developmental Gene Expression 3
    Gene Ontology 8
    Phenotypes 9
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory