BB019430 Gene Detail

Summary

• Symbol
  BB019430
• Name
  expressed sequence BB019430

• Feature Type
  lncRNA gene
• IDs
  MGI:2143891
  NCBI Gene: 103505
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:58532567-58540099 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 29.39 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  390 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2143891	lncRNA gene	Chr10:58532567-58540101 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0017250	protein coding gene	Chr10:57827393-57827677 (+)
A/J	MGP_AJ_G0017227	protein coding gene	Chr10:56143953-56144237 (+)
AKR/J	MGP_AKRJ_G0017186	protein coding gene	Chr10:57609347-57609631 (+)
BALB/cJ	MGP_BALBcJ_G0017188	protein coding gene	Chr10:56228991-56229275 (+)
C3H/HeJ	MGP_C3HHeJ_G0017011	protein coding gene	Chr10:57523131-57523415 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0017646	protein coding gene	Chr10:59928007-59928291 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015337	protein coding gene	Chr10:53235808-53236066 (+)
CAST/EiJ	MGP_CASTEiJ_G0016582	protein coding gene	Chr10:57446046-57446329 (+)
CBA/J	MGP_CBAJ_G0016983	protein coding gene	Chr10:62060778-62061062 (+)
DBA/2J	MGP_DBA2J_G0017088	protein coding gene	Chr10:55470069-55470353 (+)
FVB/NJ	MGP_FVBNJ_G0017082	protein coding gene	Chr10:54706119-54706507 (+)
LP/J	MGP_LPJ_G0017163	protein coding gene	Chr10:58223419-58223703 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0017110	protein coding gene	Chr10:64611421-64611809 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0017683	protein coding gene	Chr10:57416786-57417070 (+)
PWK/PhJ	MGP_PWKPhJ_G0016365	protein coding gene	Chr10:55250919-55251204 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0016646	protein coding gene	Chr10:57321485-57321769 (+)

Homology

• Gene Tree
  BB019430
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving BB019430
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000091526 (Evidence)
• NCBI Gene
  103505

Representative Sequences			Length	Strain/Species
genomic	103505	NCBI Gene Model | MGI Sequence Detail	7533	C57BL/6J
transcript	NR_033565	RefSeq | MGI Sequence Detail	1320	C57BL/6
polypeptide	Q3V0L9	UniProt | EBI | MGI Sequence Detail	94	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 15

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for BB019430:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93461	Chr10:58532547-58532576 (+)	-5 bp