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Calhm5 Gene Detail
Summary
  • Symbol
    Calhm5
  • Name
    calcium homeostasis modulator family member 5
  • Synonyms
    Fam26e
  • Feature Type
    protein coding gene
  • IDs
    MGI:2143897
    NCBI Gene: 103511
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:33967348-33972515 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 18.85 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    252 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2143897
 protein coding gene Chr10:33963811-33972515 (-)
129S1/SvImJ MGP_129S1SvImJ_G0017135
 protein coding gene Chr10:32427451-32432618 (-)
A/J MGP_AJ_G0017112
 protein coding gene Chr10:31577577-31582744 (-)
AKR/J MGP_AKRJ_G0017072
 protein coding gene Chr10:31945898-31951063 (-)
BALB/cJ MGP_BALBcJ_G0017075
 protein coding gene Chr10:31520794-31525961 (-)
C3H/HeJ MGP_C3HHeJ_G0016895
 protein coding gene Chr10:32243733-32248900 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017533
 protein coding gene Chr10:33351017-33356184 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0015230
 protein coding gene Chr10:29916075-29921247 (-)
CAST/EiJ MGP_CASTEiJ_G0016474
 protein coding gene Chr10:32363439-32368591 (-)
CBA/J MGP_CBAJ_G0016869
 protein coding gene Chr10:34968497-34973664 (-)
DBA/2J MGP_DBA2J_G0016974
 protein coding gene Chr10:31158555-31163722 (-)
FVB/NJ MGP_FVBNJ_G0016969
 protein coding gene Chr10:30662554-30667721 (-)
LP/J MGP_LPJ_G0017051
 protein coding gene Chr10:32418972-32424139 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016999
 protein coding gene Chr10:35454355-35459522 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017569
 protein coding gene Chr10:31895444-31900611 (-)
PWK/PhJ MGP_PWKPhJ_G0016255
 protein coding gene Chr10:30921994-30927143 (-)
SPRET/EiJ MGP_SPRETEiJ_G0016039
 protein coding gene Chr10:31765302-31772978 (-)
WSB/EiJ MGP_WSBEiJ_G0016537
 protein coding gene Chr10:32106493-32111658 (-)



Homology
more
  • Human Ortholog
    CALHM5, calcium homeostasis modulator family member 5
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CALHM5, calcium homeostasis modulator family member 5
  • Synonyms
    C6orf188, dJ493F7.3, FAM26E
  • Links
    NCBI Gene ID: 254228
    neXtProt AC: NX_Q8N5C1
    UniProt: Q8N5C1

  • Chr Location
    6q22.1; chr6:116511639-116524788 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    718
  • Tissues
    2
  • cDNA Data
    16
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 103511 NCBI Gene Model | MGI Sequence Detail 5168 C57BL/6J ±  kb
transcript NM_178908 RefSeq | MGI Sequence Detail 1786 C57BL/6  
polypeptide Q8R100 UniProt | EBI | MGI Sequence Detail 309 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    cDNA 16

    Microarray probesets 2
Other
Accession IDs
less
MGI:6156413
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 11
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory