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AU040972 Gene Detail
Summary
  • Symbol
    AU040972
  • Name
    expressed sequence AU040972
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2144426
    NCBI Gene: 104522
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:79372549-79374857 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 46.77 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    124 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2144426
 lncRNA gene Chr11:79372545-79374857 (-)
129S1/SvImJ MGP_129S1SvImJ_G0003015
 antisense lncRNA gene Chr11:80585437-80587749 (-)
A/J MGP_AJ_G0002992
 antisense lncRNA gene Chr11:77486706-77489018 (-)
AKR/J MGP_AKRJ_G0002973
 antisense lncRNA gene Chr11:79812347-79814653 (-)
BALB/cJ MGP_BALBcJ_G0002979
 antisense lncRNA gene Chr11:77893940-77896246 (-)
C3H/HeJ MGP_C3HHeJ_G0002935
 antisense lncRNA gene Chr11:79867096-79869402 (-)
C57BL/6NJ MGP_C57BL6NJ_G0003121
 antisense lncRNA gene Chr11:83067614-83069926 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0002660
 antisense lncRNA gene Chr11:74433044-74435377 (-)
CAST/EiJ MGP_CASTEiJ_G0002905
 antisense lncRNA gene Chr11:80338845-80341157 (-)
CBA/J MGP_CBAJ_G0002932
 antisense lncRNA gene Chr11:86685937-86688243 (-)
DBA/2J MGP_DBA2J_G0002938
 antisense lncRNA gene Chr11:77037694-77040006 (-)
FVB/NJ MGP_FVBNJ_G0002957
 antisense lncRNA gene Chr11:76636060-76638372 (-)
LP/J MGP_LPJ_G0003014
 antisense lncRNA gene Chr11:81096605-81098917 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0002945
 antisense lncRNA gene Chr11:86983141-86985453 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0003125
 antisense lncRNA gene Chr11:80072410-80074722 (-)
PWK/PhJ MGP_PWKPhJ_G0002864
 antisense lncRNA gene Chr11:77853377-77855708 (-)
SPRET/EiJ MGP_SPRETEiJ_G0002809
 antisense lncRNA gene Chr11:79680737-79683041 (-)
WSB/EiJ MGP_WSBEiJ_G0002935
 antisense lncRNA gene Chr11:79897031-79899337 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
Sequences &
Gene Models
less
  • All Sequences
    29
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 104522 NCBI Gene Model | MGI Sequence Detail 2309 C57BL/6J ±  kb
transcript NR_045305 RefSeq | MGI Sequence Detail 1038 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 2
Other
Accession IDs
less
MGI:2144425
References
more
  • Summaries
    All 20
    Phenotypes 8
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory