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Ttc38 Gene Detail
Summary
  • Symbol
    Ttc38
  • Name
    tetratricopeptide repeat domain 38
  • Feature Type
    protein coding gene
  • IDs
    MGI:2146198
    NCBI Gene: 239570
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:85716545-85743023 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 40.42 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    834 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2146198
 protein coding gene Chr15:85716507-85743023 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022197
 protein coding gene Chr15:86750876-86785625 (+)
A/J MGP_AJ_G0022156
 protein coding gene Chr15:83500749-83527641 (+)
AKR/J MGP_AKRJ_G0022131
 protein coding gene Chr15:85968615-85996712 (+)
BALB/cJ MGP_BALBcJ_G0022162
 protein coding gene Chr15:83629372-83657921 (+)
C3H/HeJ MGP_C3HHeJ_G0021932
 protein coding gene Chr15:85910578-85939140 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022607
 protein coding gene Chr15:89991695-90021839 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020132
 protein coding gene Chr15:79819916-79846385 (+)
CAST/EiJ MGP_CASTEiJ_G0021454
 protein coding gene Chr15:86718524-86749298 (+)
CBA/J MGP_CBAJ_G0021899
 protein coding gene Chr15:92992971-93029065 (+)
DBA/2J MGP_DBA2J_G0022026
 protein coding gene Chr15:82963519-82991545 (+)
FVB/NJ MGP_FVBNJ_G0022005
 protein coding gene Chr15:82041067-82068715 (+)
LP/J MGP_LPJ_G0022097
 protein coding gene Chr15:86909741-86938073 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022025
 protein coding gene Chr15:97650292-97682749 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022622
 protein coding gene Chr15:85973242-86001851 (+)
PWK/PhJ MGP_PWKPhJ_G0021195
 protein coding gene Chr15:82979627-83008837 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021029
 protein coding gene Chr15:85682697-85714257 (+)
WSB/EiJ MGP_WSBEiJ_G0021503
 protein coding gene Chr15:86466969-86498287 (+)



Homology
more
  • Human Ortholog
    TTC38, tetratricopeptide repeat domain 38
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TTC38, tetratricopeptide repeat domain 38
  • Synonyms
    LL22NC03-5H6.5
  • Links
    NCBI Gene ID: 55020
    neXtProt AC: NX_Q5R3I4
    UniProt: Q5R3I4

  • Chr Location
    22q13.31; chr22:46267961-46294008 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    26 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    72
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 239570 NCBI Gene Model | MGI Sequence Detail 26479 C57BL/6J ±  kb
transcript NM_001416054 RefSeq | MGI Sequence Detail 3804 C57BL/6  
polypeptide A3KMP2 UniProt | EBI | MGI Sequence Detail 465 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 72
    cDNA 72

    Microarray probesets 5
References
more
  • Summaries
    All 46
    Diseases 1
    Phenotypes 26
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory