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Smim29 Gene Detail
Summary
  • Symbol
    Smim29
  • Name
    small integral membrane protein 29
  • Synonyms
    AI413582
  • Feature Type
    protein coding gene
  • IDs
    MGI:2146839
    NCBI Gene: 106672
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:27782743-27784706 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 14.53 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    89 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2146839
 protein coding gene Chr17:27782547-27784730 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023422
 protein coding gene Chr17:26875929-26880355 (-)
A/J MGP_AJ_G0023380
 protein coding gene Chr17:26025450-26027624 (-)
AKR/J MGP_AKRJ_G0023345
 protein coding gene Chr17:26188466-26190640 (-)
BALB/cJ MGP_BALBcJ_G0023385
 protein coding gene Chr17:26300542-26302716 (-)
C3H/HeJ MGP_C3HHeJ_G0023146
 protein coding gene Chr17:26559135-26561309 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023827
 protein coding gene Chr17:27988790-27995151 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021302
 protein coding gene Chr17:23409994-23412136 (-)
CAST/EiJ MGP_CASTEiJ_G0022647
 protein coding gene Chr17:26508077-26510243 (-)
CBA/J MGP_CBAJ_G0023120
 protein coding gene Chr17:28953692-28955866 (-)
DBA/2J MGP_DBA2J_G0023251
 protein coding gene Chr17:25588052-25590212 (-)
FVB/NJ MGP_FVBNJ_G0023221
 protein coding gene Chr17:25371277-25373451 (-)
LP/J MGP_LPJ_G0023329
 protein coding gene Chr17:27138255-27140429 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023239
 protein coding gene Chr17:28448807-28450981 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023869
 protein coding gene Chr17:26592167-26594341 (-)
PWK/PhJ MGP_PWKPhJ_G0022397
 protein coding gene Chr17:24370715-24372888 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022215
 protein coding gene Chr17:24593272-24595443 (-)
WSB/EiJ MGP_WSBEiJ_G0022709
 protein coding gene Chr17:26579560-26581734 (-)



Homology
more
  • Human Ortholog
    SMIM29, small integral membrane protein 29
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SMIM29, small integral membrane protein 29
  • Synonyms
    C6orf1, LBH
  • Links
    NCBI Gene ID: 221491
    neXtProt AC: NX_Q86T20
    UniProt: Q86T20

  • Chr Location
    6p21.31
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 106672 NCBI Gene Model | MGI Sequence Detail 1964 C57BL/6J ±  kb
transcript NM_001413715 RefSeq | MGI Sequence Detail 924 C57BL/6  
polypeptide Q8R043 UniProt | EBI | MGI Sequence Detail 102 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 4
Other
Accession IDs
less
MGI:2146945, MGI:7280698
References
more
  • Summaries
    All 26
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory