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E330013P04Rik Gene Detail
Summary
  • Symbol
    E330013P04Rik
  • Name
    RIKEN cDNA E330013P04 gene
  • Synonyms
    9930018I18Rik, ln-CR9
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2147732
    NCBI Gene: 107376
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:60133107-60151023 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 19, 56.52 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    336 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2147732
 lncRNA gene Chr19:60132997-60160005 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005850
 lincRNA gene Chr19:60697398-60716877 (+)
A/J MGP_AJ_G0005842
 lincRNA gene Chr19:57735882-57753827 (+)
AKR/J MGP_AKRJ_G0005817
 lincRNA gene Chr19:59539725-59557680 (+)
BALB/cJ MGP_BALBcJ_G0005821
 lincRNA gene Chr19:57809169-57827160 (+)
C3H/HeJ MGP_C3HHeJ_G0005768
 lincRNA gene Chr19:59795716-59813639 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005982
 lincRNA gene Chr19:62171000-62188918 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005319
 lincRNA gene Chr19:56586834-56604616 (+)
CAST/EiJ MGP_CASTEiJ_G0005705
 lincRNA gene Chr19:59879371-59897333 (+)
CBA/J MGP_CBAJ_G0005753
 lincRNA gene Chr19:65203481-65221436 (+)
DBA/2J MGP_DBA2J_G0005774
 lincRNA gene Chr19:57490175-57508269 (+)
FVB/NJ MGP_FVBNJ_G0005800
 lincRNA gene Chr19:57205702-57223625 (+)
LP/J MGP_LPJ_G0005854
 lincRNA gene Chr19:60544489-60563291 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005787
 lincRNA gene Chr19:64374841-64395179 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005978
 lincRNA gene Chr19:59787607-59806787 (+)
PWK/PhJ MGP_PWKPhJ_G0005654
 lincRNA gene Chr19:57479812-57498310 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005567
 lincRNA gene Chr19:58427412-58445366 (+)
WSB/EiJ MGP_WSBEiJ_G0005758
 lincRNA gene Chr19:59897422-59915391 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    906
  • Tissues
    28
  • cDNA Data
    14
  • Literature Summary
    3
Sequences &
Gene Models
less
  • All Sequences
    43
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 107376 NCBI Gene Model | MGI Sequence Detail 17917 C57BL/6J ±  kb
transcript NR_026942 RefSeq | MGI Sequence Detail 2090 C57BL/6  
polypeptide Q8C2X9 UniProt | EBI | MGI Sequence Detail 104 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 14
    cDNA 14

    Microarray probesets 2
Other
Accession IDs
less
MGI:2442426
References
more
  • Summaries
    All 20
    Developmental Gene Expression 3
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:339532 Li J, et al., Integrative genomic analysis of early neurogenesis reveals a temporal genetic program for differentiation and specification of preplate and Cajal-Retzius neurons. PLoS Genet. 2021 Mar;17(3):e1009355
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory