AW822252 Gene Detail

Summary

• Symbol
  AW822252
• Name
  expressed sequence AW822252

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:2148030
  NCBI Gene: 331578
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:52718504-52718740 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 29.96 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  94 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2148030	lncRNA gene	ChrX:52698889-52718740 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015780	unclassified non-coding RNA gene	ChrX:48960718-48980368 (-)
A/J	MGP_AJ_G0015757	unclassified non-coding RNA gene	ChrX:48855247-48867527 (-)
AKR/J	MGP_AKRJ_G0015719	unclassified non-coding RNA gene	ChrX:50223159-50246138 (-)
BALB/cJ	MGP_BALBcJ_G0015718	unclassified non-coding RNA gene	ChrX:48330113-48345306 (-)
C3H/HeJ	MGP_C3HHeJ_G0015538	unclassified non-coding RNA gene	ChrX:49246147-49263514 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016172	unclassified non-coding RNA gene	ChrX:50152229-50162468 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013896	unclassified non-coding RNA gene	ChrX:46016758-51313441 (+)
CAST/EiJ	MGP_CASTEiJ_G0015093	unclassified non-coding RNA gene	ChrX:36532646-36543391 (-)
CBA/J	MGP_CBAJ_G0015518	unclassified non-coding RNA gene	ChrX:51529989-51549009 (-)
DBA/2J	MGP_DBA2J_G0015616	unclassified non-coding RNA gene	ChrX:48592045-48602353 (-)
FVB/NJ	MGP_FVBNJ_G0015621	unclassified non-coding RNA gene	ChrX:48214549-48229908 (-)
LP/J	MGP_LPJ_G0015698	unclassified non-coding RNA gene	ChrX:49337623-49376361 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015644	unclassified non-coding RNA gene	ChrX:53082373-53092731 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016216	unclassified non-coding RNA gene	ChrX:48862586-48878941 (-)
PWK/PhJ	MGP_PWKPhJ_G0014875	unclassified non-coding RNA gene	ChrX:36068512-36093688 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014662	unclassified non-coding RNA gene	ChrX:37340455-37352797 (+)
WSB/EiJ	MGP_WSBEiJ_G0015197	unclassified non-coding RNA gene	ChrX:48425688-48448454 (-)

Homology

• Gene Tree
  AW822252
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2

• Ensembl
  ENSMUSG00000085998 (Evidence)
• NCBI Gene
  331578

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085998	Ensembl Gene Model | MGI Sequence Detail	237	C57BL/6J
transcript	ENSMUST00000208904	Ensembl | MGI Sequence Detail	237	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 8
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;