Tnxa Pseudogene Detail

Summary

• Symbol
  Tnxa
• Name
  tenascin XA (pseudogene)

• Feature Type
  pseudogene
• IDs
  MGI:2148489
  NCBI Gene: 100043024
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:34995529-35020597 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 18.33 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2148489	pseudogene	Chr17:34990369-35020597 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040159	pseudogene	Chr17:34863952-34905440 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0039784	pseudogene	Chr17:34508665-34594617 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040728	pseudogene	Chr17:36193812-36233507 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037193	pseudogene	Chr17:31484058-31517704 (+)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0040824	pseudogene	Chr17:34349106-34358516 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Tnxa
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  1

• Ensembl
  ENSMUSG00000092200 (Evidence)
• NCBI Gene
  100043024

Representative Sequences			Length	Strain/Species
genomic	100043024	NCBI Gene Model | MGI Sequence Detail	25069	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:63109 Yung Yu C, et al., The human and mouse MHC class III region: a parade of 21 genes at the centromeric segment. Immunol Today. 2000 Jul;21(7):320-8
• Latest
  J:68853 Yang Z, et al., Organizations and gene duplications of the human and mouse MHC complement gene clusters. Exp Clin Immunogenet. 2000;17(1):1-17