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Rnu11 Gene Detail
Summary
  • Symbol
    Rnu11
  • Name
    U11 small nuclear RNA
  • Synonyms
    MBII-407
  • Feature Type
    snRNA gene
  • IDs
    MGI:2148804
    NCBI Gene: 353373
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:131997390-131997497 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 65.08 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    135 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2148804
 snRNA gene Chr4:131997390-131997524 (-)
129S1/SvImJ MGP_129S1SvImJ_G0037943
 snRNA gene Chr4:134406117-134406250 (-)
A/J MGP_AJ_G0037929
 snRNA gene Chr4:128824232-128824365 (-)
AKR/J MGP_AKRJ_G0037868
 snRNA gene Chr4:132444049-132444182 (-)
BALB/cJ MGP_BALBcJ_G0037914
 snRNA gene Chr4:129435792-129435925 (-)
C3H/HeJ MGP_C3HHeJ_G0037588
 snRNA gene Chr4:132696765-132696898 (-)
C57BL/6NJ MGP_C57BL6NJ_G0038443
 snRNA gene Chr4:139255513-139255646 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0035322
 snRNA gene Chr4:121903207-121903340 (-)
CAST/EiJ MGP_CASTEiJ_G0036747
 snRNA gene Chr4:130764415-130764548 (-)
CBA/J MGP_CBAJ_G0037561
 snRNA gene Chr4:142823638-142823771 (-)
DBA/2J MGP_DBA2J_G0037745
 snRNA gene Chr4:129247763-129247896 (-)
FVB/NJ MGP_FVBNJ_G0037692
 snRNA gene Chr4:128096351-128096484 (-)
LP/J MGP_LPJ_G0037791
 snRNA gene Chr4:134562890-134563023 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0037703
 snRNA gene Chr4:147419869-147420002 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0038555
 snRNA gene Chr4:132845904-132846037 (-)
PWK/PhJ MGP_PWKPhJ_G0036438
 snRNA gene Chr4:125926534-125926667 (-)
SPRET/EiJ MGP_SPRETEiJ_G0036213
 snRNA gene Chr4:128716617-128716750 (-)
WSB/EiJ MGP_WSBEiJ_G0036962
 snRNA gene Chr4:133026458-133026591 (-)



Homology
more
  • Human Ortholog
    RNU11, RNA, U11 small nuclear
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RNU11, RNA, U11 small nuclear
  • Synonyms
    RNU11-1, U11
  • Links
    NCBI Gene ID: 26824

  • Chr Location
    1p35.3; chr1:28648600-28648734 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotypes from 1 allele in 2 genetic backgrounds
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous constitutive knockout is embryonic lethal. Conditional knockout in the pallium causes microcephaly.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    779
  • Tissues
    33
  • cDNA Data
    1
  • Literature Summary
    5
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      23
    • RefSeq
      1
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 353373 NCBI Gene Model | MGI Sequence Detail 108 C57BL/6J ±  kb
    transcript NR_002865 RefSeq | MGI Sequence Detail 108 Not Specified  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 4
      cDNA 1
      Primer pair 1
      Other 2
    References
    more
    • Summaries
      All 16
      Developmental Gene Expression 5
      Gene Ontology 1
      Phenotypes 6
    • Earliest
      J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
    • Latest
      J:319558 Bizen N, et al., Ddx20, an Olig2 binding factor, governs the survival of neural and oligodendrocyte progenitor cells via proper Mdm2 splicing and p53 suppression. Cell Death Differ. 2022;
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory