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Ncr3-ps Pseudogene Detail
Summary
  • Symbol
    Ncr3-ps
  • Name
    natural cytotoxicity triggering receptor 3, pseudogene
  • Synonyms
    1C7, Ly117, Ncr3
  • Feature Type
    pseudogene
  • IDs
    MGI:2149332
    NCBI Gene: 667612
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr17:35399511-35403638 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 18.59 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2149332
 pseudogene Chr17:35399511-35403785 (+)
129S1/SvImJ MGP_129S1SvImJ_G0040161
 pseudogene Chr17:35328265-35332399 (+)
A/J MGP_AJ_G0040151
 pseudogene Chr17:34152662-34156777 (+)
AKR/J MGP_AKRJ_G0040075
 pseudogene Chr17:34630147-34635643 (+)
BALB/cJ MGP_BALBcJ_G0040139
 pseudogene Chr17:34293284-34297820 (+)
C3H/HeJ MGP_C3HHeJ_G0039785
 pseudogene Chr17:35034274-35039749 (+)
C57BL/6NJ MGP_C57BL6NJ_G0040729
 pseudogene Chr17:36670745-36677257 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0037196
 pseudogene Chr17:31924256-31928602 (+)
CAST/EiJ MGP_CASTEiJ_G0038874
 pseudogene Chr17:35031351-35038697 (+)
CBA/J MGP_CBAJ_G0039750
 pseudogene Chr17:38179774-38188996 (+)
DBA/2J MGP_DBA2J_G0039947
 pseudogene Chr17:33477165-33481493 (+)
FVB/NJ MGP_FVBNJ_G0039910
 pseudogene Chr17:33318878-33324330 (+)
LP/J MGP_LPJ_G0039992
 pseudogene Chr17:35656754-35660892 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0039897
 pseudogene Chr17:37111251-37115658 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0040828
 pseudogene Chr17:34856368-34862912 (+)
PWK/PhJ MGP_PWKPhJ_G0038567
 pseudogene Chr17:32314336-32318599 (+)
SPRET/EiJ MGP_SPRETEiJ_G0038270
 pseudogene Chr17:32865209-32870667 (+)
WSB/EiJ MGP_WSBEiJ_G0039097
 pseudogene Chr17:34980261-34986724 (+)



Homology
more
  • Human Ortholog
    NCR3, natural cytotoxicity triggering receptor 3
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    NCR3, natural cytotoxicity triggering receptor 3
  • Synonyms
    1C7, CD337, LY117, MALS, NKp30
  • Links
    NCBI Gene ID: 259197
    neXtProt AC: NX_O14931
    UniProt: O14931

  • Chr Location
    6p21.33; chr6:31588895-31593006 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with human NCR3 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    4
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000086076 Ensembl Gene Model | MGI Sequence Detail 4128 C57BL/6J ±  kb
transcript ENSMUST00000134687 Ensembl | MGI Sequence Detail 525 Not Applicable  
For the selected sequence
Other
Accession IDs
less
MGI:3644572
References
more
  • Summaries
    All 11
    Gene Ontology 1
  • Earliest
    J:44259 de Baey A, et al., Complex expression pattern of the TNF region gene LST1 through differential regulation, initiation, and alternative splicing. Genomics. 1997 Nov 1;45(3):591-600
  • Latest
    J:267073 Hollyoake M, et al., NKp30 (NCR3) is a pseudogene in 12 inbred and wild mouse strains, but an expressed gene in Mus caroli. Mol Biol Evol. 2005 Aug;22(8):1661-72
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory