Arl4aos Gene Detail

Summary

• Symbol
  Arl4aos
• Name
  ADP-ribosylation factor-like 4A, opposite strand
• Synonyms
  4930555J06Rik, Gm4547

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:2151103
  NCBI Gene: 100043606
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr12:40088098-40090026 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 18.06 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2151103	antisense lncRNA gene	Chr12:40088076-40091297 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003132	antisense lncRNA gene	Chr12:38442642-38444570 (+)
A/J	MGP_AJ_G0003109	antisense lncRNA gene	Chr12:37182026-37183958 (+)
AKR/J	MGP_AKRJ_G0003089	antisense lncRNA gene	Chr12:38297649-38299581 (+)
BALB/cJ	MGP_BALBcJ_G0003096	antisense lncRNA gene	Chr12:37397491-37399423 (+)
C3H/HeJ	MGP_C3HHeJ_G0003052	antisense lncRNA gene	Chr12:38242921-38244853 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003239	antisense lncRNA gene	Chr12:39596932-39598860 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002773	antisense lncRNA gene	Chr12:36320388-36322294 (+)
CAST/EiJ	MGP_CASTEiJ_G0003021	antisense lncRNA gene	Chr12:33414889-33416828 (+)
CBA/J	MGP_CBAJ_G0003049	antisense lncRNA gene	Chr12:40926546-40928474 (+)
DBA/2J	MGP_DBA2J_G0003054	antisense lncRNA gene	Chr12:37040276-37042204 (+)
FVB/NJ	MGP_FVBNJ_G0003074	antisense lncRNA gene	Chr12:36674966-36676886 (+)
LP/J	MGP_LPJ_G0003129	antisense lncRNA gene	Chr12:38430123-38432051 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003063	antisense lncRNA gene	Chr12:41084446-41086366 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003243	antisense lncRNA gene	Chr12:37868120-37870048 (+)
PWK/PhJ	MGP_PWKPhJ_G0002979	antisense lncRNA gene	Chr12:31717017-31718938 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002923	antisense lncRNA gene	Chr12:32519520-32521440 (+)
WSB/EiJ	MGP_WSBEiJ_G0003052	antisense lncRNA gene	Chr12:38169403-38171323 (+)

Homology

• Gene Tree
  Arl4aos
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000086315 (Evidence)
• NCBI Gene
  100043606

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086315	Ensembl Gene Model | MGI Sequence Detail	1929	C57BL/6J
transcript	ENSMUST00000135883	Ensembl | MGI Sequence Detail	748	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:3782731

References

• Summaries
  All 11

  Phenotypes 1
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for Arl4aos:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113299	Chr12:40088069-40088090 (+)	-18 bp
Tssr113300	Chr12:40088092-40088106 (+)	1 bp
Tssr113301	Chr12:40088108-40088117 (+)	15 bp
Tssr113302	Chr12:40088320-40088334 (+)	229 bp