Atp6v0c-ps2 Pseudogene Detail

Summary

• Symbol
  Atp6v0c-ps2
• Name
  ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2
• Synonyms
  Atp6c3, Atp6c-rs2, Atp6l-ps2, Atp6v0c-rs2, Atpl-rs2, Gm15487, lysosomal 16kDa, lysosomal 16kDa, MGPLlambda1-3

• Feature Type
  pseudogene
• IDs
  MGI:2151816
  NCBI Gene: 100039636
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr6:37783021-37783485 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 16.91 cM
• Mapping Data
  4 experiments

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  15
• RFLP
  2

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2151816	pseudogene	Chr6:37782910-37784042 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013792	pseudogene	Chr7:1326597-1327059 (+)
A/J	MGP_AJ_G0013788	pseudogene	Chr7:1338265-1338727 (+)
AKR/J	MGP_AKRJ_G0013741	pseudogene	Chr7:1409033-1409495 (+)
BALB/cJ	MGP_BALBcJ_G0013770	pseudogene	Chr7:1401904-1402366 (+)
C3H/HeJ	MGP_C3HHeJ_G0013596	pseudogene	Chr7:1370459-1370921 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014163	pseudogene	Chr7:1354399-1354861 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0013573	pseudogene	Chr7:1559837-1560299 (+)
DBA/2J	MGP_DBA2J_G0013654	pseudogene	Chr7:1300026-1300488 (+)
FVB/NJ	MGP_FVBNJ_G0013653	pseudogene	Chr7:1281816-1282678 (+)
LP/J	MGP_LPJ_G0013341	pseudogene	Chr6:36124713-36125117 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013668	pseudogene	Chr7:1489485-1489947 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014144	pseudogene	Chr7:1311462-1311924 (+)
PWK/PhJ	MGP_PWKPhJ_G0010878	pseudogene	Chr17:20848401-20849059 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0013339	pseudogene	Chr7:1320134-1320797 (+)

Homology

• Gene Tree
  Atp6v0c-ps2
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000080242 (Evidence)
• NCBI Gene
  100039636

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080242	Ensembl Gene Model | MGI Sequence Detail	465	C57BL/6J
transcript	ENSMUST00000122373	Ensembl | MGI Sequence Detail	465	Not Applicable
polypeptide	A4FVC9	UniProt | EBI | MGI Sequence Detail	48	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR035921 F/V-ATP synthase subunit C superfamily

Molecular
Reagents

• All nucleic 4

  cDNA 3

  Primer pair 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGD-MRK-36197, MGD-MRK-36472, MGI:107623, MGI:1338880, MGI:3704265, MGI:3709610

References

• Summaries
  All 18
• Earliest
  J:44483 Brady KP, et al., Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Genome Res. 1997 Nov;7(11):1085-93
• Latest
  J:79792 Simckes AM, et al., Chromosomal localization of three vacuolar-H(+)-ATPase 16 kDa subunit (ATP6V0C) genes in the murine genome. Cytogenet Genome Res. 2002;97(1-2):111-5

TSS for Atp6v0c-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55620	Chr6:37782907-37782914 (+)	-110 bp
Tssr55621	Chr6:37783233-37783278 (+)	235 bp
Tssr55622	Chr6:37783397-37783433 (+)	394 bp