AA543401 Pseudogene Detail

Summary

• Symbol
  AA543401
• Name
  cDNA sequence, AA543401
• Synonyms
  Mycs-like

• Feature Type
  pseudogene
• IDs
  MGI:2155152
  NCBI Gene: 100417434
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:107070006-107071260 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 57.98 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  79 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2155152	pseudogene	Chr9:107069992-107071260 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014251	pseudogene	Chr9:109039814-109041082 (+)
A/J	MGP_AJ_G0014267	pseudogene	Chr9:105073986-105075254 (+)
AKR/J	MGP_AKRJ_G0014192	pseudogene	Chr9:107691213-107692481 (+)
BALB/cJ	MGP_BALBcJ_G0014217	pseudogene	Chr9:104762075-104763343 (+)
C3H/HeJ	MGP_C3HHeJ_G0014048	pseudogene	Chr9:108109128-108110396 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014671	pseudogene	Chr9:112046552-112047820 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012479	pseudogene	Chr9:102536529-102537864 (+)
CAST/EiJ	MGP_CASTEiJ_G0013702	pseudogene	Chr9:108043456-108044724 (+)
CBA/J	MGP_CBAJ_G0014030	pseudogene	Chr9:116018253-116019521 (+)
DBA/2J	MGP_DBA2J_G0014115	pseudogene	Chr9:104539583-104540851 (+)
FVB/NJ	MGP_FVBNJ_G0014113	pseudogene	Chr9:103303568-103304836 (+)
LP/J	MGP_LPJ_G0014205	pseudogene	Chr9:109244588-109245856 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014148	pseudogene	Chr9:117592319-117593587 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014641	pseudogene	Chr9:107970271-107971539 (+)
PWK/PhJ	MGP_PWKPhJ_G0013516	pseudogene	Chr9:104853607-104854875 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013306	pseudogene	Chr9:108043164-108044436 (+)
WSB/EiJ	MGP_WSBEiJ_G0013763	pseudogene	Chr9:107866440-107867708 (+)

Homology

• Gene Tree
  AA543401
  

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000092125 (Evidence)
• NCBI Gene
  100417434

Representative Sequences			Length	Strain/Species
genomic	100417434	NCBI Gene Model | MGI Sequence Detail	1255	C57BL/6J
transcript	NR_102273	RefSeq | MGI Sequence Detail	1255	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 4

  Primer pair 2

References

• Summaries
  All 7
• Earliest
  J:71144 Yamasaki Y, et al., Mouse chromosome 19 and distal rat chromosome 1: a chromosome segment conserved in evolution. Hereditas. 2001;134(1):23-34