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Pramel6 Gene Detail
Summary
  • Symbol
    Pramel6
  • Name
    PRAME like 6
  • Feature Type
    protein coding gene
  • IDs
    MGI:2156390
    NCBI Gene: 347711
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:87336909-87341209 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 49.86 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    177 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2156390
 protein coding gene Chr2:87336909-87341216 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026011
 protein coding gene Chr2:88559267-88563574 (+)
A/J MGP_AJ_G0025980
 protein coding gene Chr2:85016742-85021054 (+)
AKR/J MGP_AKRJ_G0025952
 protein coding gene Chr2:87353465-87357777 (+)
BALB/cJ MGP_BALBcJ_G0025983
 protein coding gene Chr2:85212678-85216990 (+)
C3H/HeJ MGP_C3HHeJ_G0025738
 protein coding gene Chr2:87574091-87578402 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026430
 protein coding gene Chr2:91489002-91493309 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023828
 protein coding gene Chr2:81715108-81719517 (+)
CAST/EiJ MGP_CASTEiJ_G0025199
 protein coding gene Chr2:88048204-88052511 (+)
CBA/J MGP_CBAJ_G0025718
 protein coding gene Chr2:94539924-94544235 (+)
DBA/2J MGP_DBA2J_G0025849
 protein coding gene Chr2:84610897-84615209 (+)
FVB/NJ MGP_FVBNJ_G0025813
 protein coding gene Chr2:83720095-83724407 (+)
LP/J MGP_LPJ_G0025950
 protein coding gene Chr2:88577927-88582239 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025841
 protein coding gene Chr2:97329766-97334078 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0026483
 protein coding gene Chr2:87474929-87479241 (+)
PWK/PhJ MGP_PWKPhJ_G0024941
 protein coding gene Chr2:84527714-84532025 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024747
 protein coding gene Chr2:87500719-87505059 (+)
WSB/EiJ MGP_WSBEiJ_G0025275
 protein coding gene Chr2:88189190-88193501 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    712
  • Tissues
    4
  • cDNA Data
    17
  • Literature Summary
    4
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 347711 NCBI Gene Model | MGI Sequence Detail 4301 C57BL/6J ±  kb
transcript NM_001356544 RefSeq | MGI Sequence Detail 1870 C57BL/6  
polypeptide NP_839980 RefSeq | MGI Sequence Detail 485 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR032675 Leucine-rich repeat domain superfamily
    IPR026271 PRAME
    IPR050694 PRAME domain-containing protein
Molecular
Reagents
less
  • All nucleic 20
    Genomic 2
    cDNA 17
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:2139505, MGI:2139506
References
more
  • Summaries
    All 33
    Developmental Gene Expression 4
    Gene Ontology 1
    Phenotypes 11
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory