Serpina3e-ps Pseudogene Detail

Summary

• Symbol
  Serpina3e-ps
• Name
  serine (or cysteine) peptidase inhibitor, clade A, member 3E, pseudogene
• Synonyms
  2B2, alpha-1 antiproteinase, Serpina3e

• Feature Type
  pseudogene
• IDs
  MGI:2182837
  NCBI Gene: 628883
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:104155776-104159185 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 53.58 cM, cytoband F1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  391 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2182837	pseudogene	Chr12:104155053-104161119 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040014	pseudogene	Chr12:105952904-105956020 (-)
A/J	MGP_AJ_G0040018	pseudogene	Chr12:101956751-101960160 (-)
AKR/J	MGP_AKRJ_G0039937	pseudogene	Chr12:104819954-104826732 (-)
BALB/cJ	MGP_BALBcJ_G0039998	pseudogene	Chr12:102270270-102278050 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0040578	pseudogene	Chr12:109265039-109271031 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038752	pseudogene	Chr12:100093783-100098190 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0039775	pseudogene	Chr12:100220454-100224113 (-)
LP/J	MGP_LPJ_G0039851	pseudogene	Chr12:105790920-105794329 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039761	pseudogene	Chr12:116793884-116801368 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0038436	pseudogene	Chr12:95933704-95937362 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0038155	pseudogene	Chr12:98585369-98619911 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Serpina3e-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Serpina3e-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000091553 (Evidence)
• NCBI Gene
  628883

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091553	Ensembl Gene Model | MGI Sequence Detail	3410	C57BL/6J
transcript	ENSMUST00000165968	Ensembl | MGI Sequence Detail	1228	Not Applicable

Other
Accession IDs

MGI:3779640

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:25107 Inglis JD, et al., The murine Spi-2 proteinase inhibitor locus: a multigene family with a hypervariable reactive site domain. EMBO J. 1991 Feb;10(2):255-61
• Latest
  J:82699 Forsyth S, et al., A review and comparison of the murine alpha(1)-antitrypsin and alpha(1)-antichymotrypsin multigene clusters with the human clade A serpins. Genomics. 2003 Mar;81(3):336-45

TSS for Serpina3e-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr117573	Chr12:104161118-104161124 (-)	-1,936 bp