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Rbm47 Gene Detail
Summary
  • Symbol
    Rbm47
  • Name
    RNA binding motif protein 47
  • Synonyms
    9530077J19Rik, MGC:18900
  • Feature Type
    protein coding gene
  • IDs
    MGI:2384294
    NCBI Gene: 245945
  • Alliance
    gene page
  • Transcription Start Sites
    35 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:66173892-66309297 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 33.93 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    4100 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2384294
 protein coding gene Chr5:66173892-66330461 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029587
 protein coding gene Chr5:65720066-65888427 (-)
A/J MGP_AJ_G0029555
 protein coding gene Chr5:63256980-63414520 (-)
AKR/J MGP_AKRJ_G0029503
 protein coding gene Chr5:65286119-65457279 (-)
BALB/cJ MGP_BALBcJ_G0029564
 protein coding gene Chr5:63948897-64107129 (-)
C3H/HeJ MGP_C3HHeJ_G0029287
 protein coding gene Chr5:65614483-65776315 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030018
 protein coding gene Chr5:68430310-68608479 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027258
 protein coding gene Chr5:59322779-59478838 (-)
CAST/EiJ MGP_CASTEiJ_G0028695
 protein coding gene Chr5:64746520-64920047 (-)
CBA/J MGP_CBAJ_G0029256
 protein coding gene Chr5:70648179-70823409 (-)
DBA/2J MGP_DBA2J_G0029402
 protein coding gene Chr5:63289668-63445212 (-)
FVB/NJ MGP_FVBNJ_G0029362
 protein coding gene Chr5:62463541-62621032 (-)
LP/J MGP_LPJ_G0029487
 protein coding gene Chr5:66213705-66384001 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029390
 protein coding gene Chr5:73494645-73659449 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030051
 protein coding gene Chr5:64942369-65109175 (-)
PWK/PhJ MGP_PWKPhJ_G0028419
 protein coding gene Chr5:62271091-62446659 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028253
 protein coding gene Chr5:64296389-64466396 (-)
WSB/EiJ MGP_WSBEiJ_G0028775
 protein coding gene Chr5:65170512-65341017 (-)



Homology
more
  • Human Ortholog
    RBM47, RNA binding motif protein 47
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RBM47, RNA binding motif protein 47
  • Synonyms
    NET18
  • Links
    NCBI Gene ID: 54502
    neXtProt AC: NX_A0AV96
    UniProt: A0AV96

  • Chr Location
    4p14; chr4:40423267-40630875 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    31 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a gene-trapped allele exhibit partial prenatal lethality. Surviving adults are small and display impaired cytidine to uridine RNA editing.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    31
  • GO References
    10
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    1055
  • Tissues
    105
  • cDNA Data
    15
  • Literature Summary
    5
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 245945 NCBI Gene Model | MGI Sequence Detail 135406 C57BL/6J ±  kb
    transcript NM_178446 RefSeq | MGI Sequence Detail 5147 C57BL/6  
    polypeptide Q91WT8 UniProt | EBI | MGI Sequence Detail 590 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      4 Sequences
    • Protein Ontology
      PR:000013804 RNA-binding protein 47
      (term hierarchy)
    • InterPro Domains
      IPR006535 HnRNP R/Q splicing factor
      IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
      IPR035979 RNA-binding domain superfamily
      IPR047044 RNA-binding protein 47, RNA recognition motif 1
      IPR034440 RNA-binding protein 47, RNA recognition motif 2
      IPR034445 RNA-binding protein 47, RNA recognition motif 3
      IPR000504 RNA recognition motif domain
    • GlyGen
      Q91WT8 1 site, 1 O-linked glycan (1 site)
    Molecular
    Reagents
    less
    • All nucleic 21
      cDNA 16
      Primer pair 2
      Other 3

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2442481
    References
    more
    • Summaries
      All 64
      Developmental Gene Expression 5
      Gene Ontology 10
      Phenotypes 31
    • Earliest
      J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    12/17/2024
    MGI 6.24     		The Jackson Laboratory