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Sde2 Gene Detail
Summary
  • Symbol
    Sde2
  • Name
    SDE2 telomere maintenance homolog (S. pombe)
  • Synonyms
    BC031781, MGC:30618
  • Feature Type
    protein coding gene
  • IDs
    MGI:2384788
    NCBI Gene: 208768
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:180678716-180695678 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 84.46 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    521 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2384788
 protein coding gene Chr1:180678692-180695678 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016875
 protein coding gene Chr1:187320085-187338659 (+)
A/J MGP_AJ_G0016854
 protein coding gene Chr1:179738059-179755398 (+)
AKR/J MGP_AKRJ_G0016820
 protein coding gene Chr1:185079875-185096840 (+)
BALB/cJ MGP_BALBcJ_G0016812
 protein coding gene Chr1:180362490-180379505 (+)
C3H/HeJ MGP_C3HHeJ_G0016637
 protein coding gene Chr1:185854359-185872530 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017275
 protein coding gene Chr1:193336649-193357638 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014983
 protein coding gene Chr1:170718026-170734430 (+)
CAST/EiJ MGP_CASTEiJ_G0016218
 protein coding gene Chr1:185203914-185220727 (+)
CBA/J MGP_CBAJ_G0016611
 protein coding gene Chr1:200535368-200554698 (+)
DBA/2J MGP_DBA2J_G0016717
 protein coding gene Chr1:178570116-178587964 (+)
FVB/NJ MGP_FVBNJ_G0016713
 protein coding gene Chr1:176673007-176690830 (+)
LP/J MGP_LPJ_G0016791
 protein coding gene Chr1:188575121-188596869 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016744
 protein coding gene Chr1:207711566-207732999 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017312
 protein coding gene Chr1:184863878-184882177 (+)
PWK/PhJ MGP_PWKPhJ_G0016006
 protein coding gene Chr1:177686288-177700238 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015782
 protein coding gene Chr1:183798377-183816212 (+)
WSB/EiJ MGP_WSBEiJ_G0016281
 protein coding gene Chr1:185054078-185074970 (+)



Homology
more
  • Human Ortholog
    SDE2, SDE2 telomere maintenance homolog
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SDE2, SDE2 telomere maintenance homolog
  • Synonyms
    C1orf55, dJ671D7.1
  • Links
    NCBI Gene ID: 163859
    neXtProt AC: NX_Q6IQ49
    UniProt: Q6IQ49

  • Chr Location
    1q42.12; chr1:225982702-225999343 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    32
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    718
  • Tissues
    2
  • cDNA Data
    60
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 208768 NCBI Gene Model | MGI Sequence Detail 16963 C57BL/6J ±  kb
transcript NM_145943 RefSeq | MGI Sequence Detail 3203 FVB/N  
polypeptide Q8K1J5 UniProt | EBI | MGI Sequence Detail 448 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 60
    cDNA 60

    Microarray probesets 7
References
more
  • Summaries
    All 32
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 8
  • Earliest
    J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory