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BC002059 Gene Detail
Summary
  • Symbol
    BC002059
  • Name
    cDNA sequence BC002059
  • Synonyms
    MGC:6110
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2384864
    NCBI Gene: 213811
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:17171798-17194419 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 9.77 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    486 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2384864
 lncRNA gene Chr17:17171798-17194425 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0005683
 lincRNA gene Chr17:14558663-14573403 (+)
AKR/J MGP_AKRJ_G0005662
 lincRNA gene Chr17:14615413-14616273 (+)
BALB/cJ MGP_BALBcJ_G0005663
 lincRNA gene Chr17:14508018-14537984 (+)
C3H/HeJ MGP_C3HHeJ_G0005610
 lincRNA gene Chr17:14797430-14798290 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005820
 lincRNA gene Chr17:15549746-15552732 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0005552
 lincRNA gene Chr17:14677030-14677890 (+)
CBA/J MGP_CBAJ_G0005598
 lincRNA gene Chr17:16141730-16142590 (+)
DBA/2J MGP_DBA2J_G0005616
 lincRNA gene Chr17:14280239-14281099 (+)
FVB/NJ MGP_FVBNJ_G0005642
 lincRNA gene Chr17:14094440-14118018 (+)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0005627
 lincRNA gene Chr17:15662153-15695150 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005821
 lincRNA gene Chr17:14808484-14831561 (+)
PWK/PhJ MGP_PWKPhJ_G0005498
 lincRNA gene Chr17:13788578-13789438 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005417
 lincRNA gene Chr17:13793771-13794631 (+)
WSB/EiJ MGP_WSBEiJ_G0005604
 lincRNA gene Chr17:15129904-15130764 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    783
  • Tissues
    16
  • cDNA Data
    7
  • Literature Summary
    2
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 213811 NCBI Gene Model | MGI Sequence Detail 22622 C57BL/6J ±  kb
transcript NR_166920 RefSeq | MGI Sequence Detail 2094 C57BL/6  
polypeptide Q99M29 UniProt | EBI | MGI Sequence Detail 292 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR039938 Transcription factor Sp4-like
    IPR036236 Zinc finger C2H2 superfamily
    IPR013087 Zinc finger C2H2-type
Molecular
Reagents
less
  • All nucleic 8
    cDNA 7
    Primer pair 1

    Microarray probesets 2
References
more
  • Summaries
    All 17
    Developmental Gene Expression 2
    Phenotypes 4
  • Earliest
    J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
  • Latest
    J:331896 Huang J, et al., m(6)A-modified lincRNA Dubr is required for neuronal development by stabilizing YTHDF1/3 and facilitating mRNA translation. Cell Rep. 2022 Nov 22;41(8):111693
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory