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Rrp36 Gene Detail
Summary
  • Symbol
    Rrp36
  • Name
    ribosomal RNA processing 36
  • Synonyms
    BC011248, MGC:19067
  • Feature Type
    protein coding gene
  • IDs
    MGI:2385053
    NCBI Gene: 224823
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:46977249-46985252 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 22.90 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    353 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2385053
 protein coding gene Chr17:46977249-46985278 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023825
 protein coding gene Chr17:47746354-47754496 (-)
A/J MGP_AJ_G0023783
 protein coding gene Chr17:46599423-46606773 (-)
AKR/J MGP_AKRJ_G0023754
 protein coding gene Chr17:46945745-46951940 (-)
BALB/cJ MGP_BALBcJ_G0023787
 protein coding gene Chr17:46500834-46507172 (-)
C3H/HeJ MGP_C3HHeJ_G0023550
 protein coding gene Chr17:47689818-47698026 (-)
C57BL/6NJ MGP_C57BL6NJ_G0024230
 protein coding gene Chr17:49796974-49803735 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021680
 protein coding gene Chr17:43381972-43388361 (-)
CAST/EiJ MGP_CASTEiJ_G0023032
 protein coding gene Chr17:47770943-47781704 (-)
CBA/J MGP_CBAJ_G0023527
 protein coding gene Chr17:51590291-51597089 (-)
DBA/2J MGP_DBA2J_G0023653
 protein coding gene Chr17:45370392-45377262 (-)
FVB/NJ MGP_FVBNJ_G0023620
 protein coding gene Chr17:44993414-45000248 (-)
LP/J MGP_LPJ_G0023734
 protein coding gene Chr17:48425267-48433413 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023649
 protein coding gene Chr17:51133462-51141810 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024275
 protein coding gene Chr17:47299219-47305568 (-)
PWK/PhJ MGP_PWKPhJ_G0022777
 protein coding gene Chr17:44708831-44717495 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022592
 protein coding gene Chr17:44165370-44175408 (-)
WSB/EiJ MGP_WSBEiJ_G0023097
 protein coding gene Chr17:47853202-47859257 (-)



Homology
more
  • Human Ortholog
    RRP36, ribosomal RNA processing 36
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RRP36, ribosomal RNA processing 36
  • Synonyms
    C6orf153, dJ20C7.4
  • Links
    NCBI Gene ID: 88745
    neXtProt AC: NX_Q96EU6
    UniProt: Q96EU6

  • Chr Location
    6p21.1; chr6:43021623-43034156 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    10
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    24
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 224823 NCBI Gene Model | MGI Sequence Detail 8004 C57BL/6J ±  kb
transcript NM_001368622 RefSeq | MGI Sequence Detail 2565 C57BL/6  
polypeptide Q3UFY0 UniProt | EBI | MGI Sequence Detail 244 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 24
    cDNA 24

    Microarray probesets 3
References
more
  • Summaries
    All 23
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory