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Sdcbp2 Gene Detail
Summary
  • Symbol
    Sdcbp2
  • Name
    syndecan binding protein (syntenin) 2
  • Synonyms
    MGC:11704
  • Feature Type
    protein coding gene
  • IDs
    MGI:2385156
    NCBI Gene: 228765
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:151414542-151431925 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 74.83 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    524 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2385156
 protein coding gene Chr2:151414203-151431925 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026641
 protein coding gene Chr2:156058187-156075568 (+)
A/J MGP_AJ_G0026607
 protein coding gene Chr2:149851003-149868370 (+)
AKR/J MGP_AKRJ_G0026577
 protein coding gene Chr2:154222650-154240026 (+)
BALB/cJ MGP_BALBcJ_G0026616
 protein coding gene Chr2:150163458-150180842 (+)
C3H/HeJ MGP_C3HHeJ_G0026359
 protein coding gene Chr2:154610970-154628348 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027065
 protein coding gene Chr2:160613208-160630592 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024436
 protein coding gene Chr2:143464471-143482002 (+)
CAST/EiJ MGP_CASTEiJ_G0025820
 protein coding gene Chr2:154829048-154846351 (+)
CBA/J MGP_CBAJ_G0026337
 protein coding gene Chr2:166490919-166508591 (+)
DBA/2J MGP_DBA2J_G0026473
 protein coding gene Chr2:149064245-149083822 (+)
FVB/NJ MGP_FVBNJ_G0026438
 protein coding gene Chr2:147513021-147530423 (+)
LP/J MGP_LPJ_G0026577
 protein coding gene Chr2:156229900-156247287 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026460
 protein coding gene Chr2:170652683-170670041 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027120
 protein coding gene Chr2:154096809-154114200 (+)
PWK/PhJ MGP_PWKPhJ_G0025554
 protein coding gene Chr2:148593422-148610866 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025357
 protein coding gene Chr2:152932614-152951316 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    SDCBP2, syndecan binding protein 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SDCBP2, syndecan binding protein 2
  • Synonyms
    SITAC, SITAC18, ST-2, ST2
  • Links
    NCBI Gene ID: 27111
    neXtProt AC: NX_Q9H190
    UniProt: Q9H190

  • Chr Location
    20p13; chr20:1309909-1329139 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    8
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    1
  • Gene trapped
    3
  • Radiation induced
    1
  • Targeted
    2
  • Genomic Mutations
    2 involving Sdcbp2
  • Incidental Mutations
    Mutagenetix , APF
  • Find Mice (IMSR)
    16 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    25
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    708
  • Tissues
    2
  • cDNA Data
    16
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000027456 Ensembl Gene Model | MGI Sequence Detail 17384 C57BL/6J ±  kb
transcript ENSMUST00000028950 Ensembl | MGI Sequence Detail 1399 Not Applicable  
polypeptide ENSMUSP00000028950 Ensembl | MGI Sequence Detail 292 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    cDNA 16

    Microarray probesets 4
References
more
  • Summaries
    All 31
    Developmental Gene Expression 2
    Gene Ontology 4
    Phenotypes 9
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory