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Cnot3 Gene Detail
Summary
  • Symbol
    Cnot3
  • Name
    CCR4-NOT transcription complex, subunit 3
  • Synonyms
    A930039N10Rik, MGC:40675
  • Feature Type
    protein coding gene
  • IDs
    MGI:2385261
    NCBI Gene: 232791
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:3648267-3664108 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 2.10 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    346 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2385261
 protein coding gene Chr7:3646717-3664108 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031525
 protein coding gene Chr7:570719-587665 (+)
A/J MGP_AJ_G0031500
 protein coding gene Chr7:509196-525595 (+)
AKR/J MGP_AKRJ_G0031428
 protein coding gene Chr7:527350-543568 (+)
BALB/cJ MGP_BALBcJ_G0031508
 protein coding gene Chr7:521962-539539 (+)
C3H/HeJ MGP_C3HHeJ_G0031228
 protein coding gene Chr7:528219-545500 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031968
 protein coding gene Chr7:541714-564539 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0029095
 protein coding gene Chr7:412710-428379 (+)
CAST/EiJ MGP_CASTEiJ_G0030597
 protein coding gene Chr7:529257-545040 (+)
CBA/J MGP_CBAJ_G0031188
 protein coding gene Chr7:665903-685842 (+)
DBA/2J MGP_DBA2J_G0031345
 protein coding gene Chr7:506943-526618 (+)
FVB/NJ MGP_FVBNJ_G0031297
 protein coding gene Chr7:501607-518124 (+)
LP/J MGP_LPJ_G0031430
 protein coding gene Chr7:577470-594201 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0031336
 protein coding gene Chr7:572669-588420 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0032002
 protein coding gene Chr7:515581-531762 (+)
PWK/PhJ MGP_PWKPhJ_G0030324
 protein coding gene Chr7:654396-670367 (+)
SPRET/EiJ MGP_SPRETEiJ_G0030148
 protein coding gene Chr7:584385-600067 (+)
WSB/EiJ MGP_WSBEiJ_G0030691
 protein coding gene Chr7:518852-536155 (+)



Homology
more
  • Human Ortholog
    CNOT3, CCR4-NOT transcription complex subunit 3
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CNOT3, CCR4-NOT transcription complex subunit 3
  • Synonyms
    IDDSADF, LENG2, NOT3, NOT3H
  • Links
    NCBI Gene ID: 4849
    neXtProt AC: NX_O75175
    UniProt: O75175

  • Chr Location
    19q13.42; chr19:54137749-54155681 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    62 phenotypes from 4 alleles in 5 genetic backgrounds
    12 phenotypes from multigenic genotypes
    21 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele show defective outgrowth of the inner cell mass and complete embryonic lethality at implantation. Heterozygotes exhibit decreased cardiac muscle contractility and develop severe cardiomyopathy leading to heart failure in response to pressure overload.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    19
  • GO References
    10
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    772
  • Tissues
    35
  • cDNA Data
    15
  • Literature Summary
    10
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000035632 Ensembl Gene Model | MGI Sequence Detail 15842 C57BL/6J ±  kb
    transcript ENSMUST00000038913 Ensembl | MGI Sequence Detail 2822 Not Applicable  
    polypeptide ENSMUSP00000039098 Ensembl | MGI Sequence Detail 751 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      6 Sequences
    • Protein Ontology
      PR:000005651 CCR4-NOT transcription complex subunit 3
      (term hierarchy)
    • InterPro Domains
      IPR007207 CCR4-Not complex component, Not N-terminal domain
      IPR038635 CCR4-NOT complex subunit 2/3/5, C-terminal domain superfamily
      IPR012270 CCR4-NOT complex, subunit 3/ 5
      IPR040168 Not2/Not3/Not5
      IPR007282 NOT2/NOT3/NOT5, C-terminal
    • GlyGen
      Q8K0V4 1 site, 1 N-linked glycan (1 site)
    Molecular
    Reagents
    less
    • All nucleic 15
      cDNA 15

      Microarray probesets 1
    Other
    Accession IDs
    less
    MGI:2443775
    References
    more
    • Summaries
      All 54
      Developmental Gene Expression 10
      Gene Ontology 10
      Phenotypes 21
    • Earliest
      J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory