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BC028528 Gene Detail
Summary
  • Symbol
    BC028528
  • Name
    cDNA sequence BC028528
  • Synonyms
    L259, MGC:41379
  • Feature Type
    protein coding gene
  • IDs
    MGI:2385885
    NCBI Gene: 229600
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:95791266-95799317 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 41.44 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    226 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2385885
 protein coding gene Chr3:95789665-95800186 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027598
 protein coding gene Chr3:96667009-96675054 (-)
A/J MGP_AJ_G0027557
 protein coding gene Chr3:93637361-93645410 (-)
AKR/J MGP_AKRJ_G0027524
 protein coding gene Chr3:95820416-95828461 (-)
BALB/cJ MGP_BALBcJ_G0027569
 protein coding gene Chr3:93418161-93426216 (-)
C3H/HeJ MGP_C3HHeJ_G0027302
 protein coding gene Chr3:96121525-96129572 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028017
 protein coding gene Chr3:100211530-100219581 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025357
 protein coding gene Chr3:89964501-89973308 (-)
CAST/EiJ MGP_CASTEiJ_G0026752
 protein coding gene Chr3:95398620-95406650 (-)
CBA/J MGP_CBAJ_G0027279
 protein coding gene Chr3:103878775-103886808 (-)
DBA/2J MGP_DBA2J_G0027418
 protein coding gene Chr3:92928770-92936817 (-)
FVB/NJ MGP_FVBNJ_G0027389
 protein coding gene Chr3:91006704-91014737 (-)
LP/J MGP_LPJ_G0027527
 protein coding gene Chr3:97979628-97987899 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027416
 protein coding gene Chr3:110007298-110015347 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028071
 protein coding gene Chr3:95468870-95476925 (-)
PWK/PhJ MGP_PWKPhJ_G0026480
 protein coding gene Chr3:92826103-92834449 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026301
 protein coding gene Chr3:93759393-93769309 (-)
WSB/EiJ MGP_WSBEiJ_G0026834
 protein coding gene Chr3:95859946-95867994 (-)



Homology
more
  • Human Ortholog
    C1orf54, chromosome 1 open reading frame 54
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    C1orf54, chromosome 1 open reading frame 54
  • Links
    NCBI Gene ID: 79630
    neXtProt AC: NX_Q8WWF1
    UniProt: Q8WWF1

  • Chr Location
    1q21.2; chr1:150268200-150280924 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele exhibit impaired and delayed post-ischemia-reperfusion injury renal recovery and lower survival after injury.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    16
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038543 Ensembl Gene Model | MGI Sequence Detail 8052 C57BL/6J ±  kb
transcript ENSMUST00000171519 Ensembl | MGI Sequence Detail 447 Not Applicable  
polypeptide ENSMUSP00000127666 Ensembl | MGI Sequence Detail 148 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    cDNA 16

    Microarray probesets 3
References
more
  • Summaries
    All 30
    Diseases 1
    Gene Ontology 2
    Phenotypes 11
  • Earliest
    J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory