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Csmd2 Gene Detail
Summary
  • Symbol
    Csmd2
  • Name
    CUB and Sushi multiple domains 2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2386401
    NCBI Gene: 329942
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:127881650-128461449 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 61.65 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    14804 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2386401
 protein coding gene Chr4:127880310-128461459 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028801
 protein coding gene Chr4:129778664-130373684 (+)
A/J MGP_AJ_G0028760
 protein coding gene Chr4:124654620-125228190 (+)
AKR/J MGP_AKRJ_G0028713
 protein coding gene Chr4:128090664-128686684 (+)
BALB/cJ MGP_BALBcJ_G0028783
 protein coding gene Chr4:125223381-125805132 (+)
C3H/HeJ MGP_C3HHeJ_G0028497
 protein coding gene Chr4:128147689-128742483 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029225
 protein coding gene Chr4:134706663-135321707 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026498
 protein coding gene Chr4:117773822-118351372 (+)
CAST/EiJ MGP_CASTEiJ_G0027930
 protein coding gene Chr4:126300481-126912701 (+)
CBA/J MGP_CBAJ_G0028463
 protein coding gene Chr4:137983685-138609209 (+)
DBA/2J MGP_DBA2J_G0028612
 protein coding gene Chr4:125087947-125662015 (+)
FVB/NJ MGP_FVBNJ_G0028579
 protein coding gene Chr4:123781593-124404297 (+)
LP/J MGP_LPJ_G0028713
 protein coding gene Chr4:130069990-130678029 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028605
 protein coding gene Chr4:142950548-143557023 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029263
 protein coding gene Chr4:128459028-129060421 (+)
PWK/PhJ MGP_PWKPhJ_G0027651
 protein coding gene Chr4:121625023-122215188 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027478
 protein coding gene Chr4:124312699-124912977 (+)
WSB/EiJ MGP_WSBEiJ_G0028010
 protein coding gene Chr4:128558562-129164623 (+)



Homology
more
  • Human Ortholog
    CSMD2, CUB and Sushi multiple domains 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CSMD2, CUB and Sushi multiple domains 2
  • Synonyms
    dJ1007G16.1, dJ1007G16.2, dJ947L8.1
  • Links
    NCBI Gene ID: 114784
    neXtProt AC: NX_Q7Z408
    UniProt: Q7Z408

  • Chr Location
    1p35.1; chr1:33513998-34165842 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    771
  • Tissues
    9
  • cDNA Data
    6
  • Literature Summary
    2
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028804 Ensembl Gene Model | MGI Sequence Detail 579800 C57BL/6J ±  kb
transcript ENSMUST00000184063 Ensembl | MGI Sequence Detail 13555 Not Applicable  
polypeptide ENSMUSP00000138958 Ensembl | MGI Sequence Detail 3611 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR000859 CUB domain
    IPR051277 SEZ6/CSMD/C4BPB Neuronal & Immune Regulators
    IPR035914 Spermadhesin, CUB domain superfamily
    IPR000436 Sushi/SCR/CCP domain
    IPR035976 Sushi/SCR/CCP superfamily
  • GlyGen
    V9GX34 15 sites, 13 N-linked glycans (15 sites)
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 4
References
more
  • Summaries
    All 24
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory