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Yrdc Gene Detail
Summary
  • Symbol
    Yrdc
  • Name
    yrdC domain containing (E.coli)
  • Synonyms
    IRIP, MGC:38336
  • Feature Type
    protein coding gene
  • IDs
    MGI:2387201
    NCBI Gene: 230734
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:124744552-124749035 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 57.92 cM, cytoband D2.2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    131 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2387201
 protein coding gene Chr4:124744472-124749035 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028756
 protein coding gene Chr4:126410081-126414390 (+)
A/J MGP_AJ_G0028715
 protein coding gene Chr4:121452032-121456604 (+)
AKR/J MGP_AKRJ_G0028668
 protein coding gene Chr4:124765034-124769563 (+)
BALB/cJ MGP_BALBcJ_G0028738
 protein coding gene Chr4:122025869-122030441 (+)
C3H/HeJ MGP_C3HHeJ_G0028452
 protein coding gene Chr4:124860981-124865553 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029180
 protein coding gene Chr4:131273070-131277676 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026453
 protein coding gene Chr4:114622764-114627699 (+)
CAST/EiJ MGP_CASTEiJ_G0027885
 protein coding gene Chr4:122920764-122925327 (+)
CBA/J MGP_CBAJ_G0028418
 protein coding gene Chr4:134528445-134533017 (+)
DBA/2J MGP_DBA2J_G0028567
 protein coding gene Chr4:121923496-121928068 (+)
FVB/NJ MGP_FVBNJ_G0028534
 protein coding gene Chr4:120549689-120554022 (+)
LP/J MGP_LPJ_G0028668
 protein coding gene Chr4:126704104-126708413 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028560
 protein coding gene Chr4:139528589-139532924 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029218
 protein coding gene Chr4:125133960-125138271 (+)
PWK/PhJ MGP_PWKPhJ_G0027606
 protein coding gene Chr4:118344889-118349415 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027432
 protein coding gene Chr4:120905791-120910232 (+)
WSB/EiJ MGP_WSBEiJ_G0027965
 protein coding gene Chr4:125207624-125211545 (+)



Homology
more
  • Human Ortholog
    YRDC, yrdC N6-threonylcarbamoyltransferase domain containing
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    YRDC, yrdC N6-threonylcarbamoyltransferase domain containing
  • Synonyms
    DRIP3, GAMOS10, IRIP, SUA5
  • Links
    NCBI Gene ID: 79693
    neXtProt AC: NX_Q86U90
    UniProt: Q86U90

  • Chr Location
    1p34.3; chr1:37802945-37808208 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with human YRDC associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    17
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    36
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 230734 NCBI Gene Model | MGI Sequence Detail 4484 C57BL/6J ±  kb
transcript NM_153566 RefSeq | MGI Sequence Detail 1558 C57BL/6  
polypeptide Q3U5F4 UniProt | EBI | MGI Sequence Detail 280 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 36
    cDNA 36

    Microarray probesets 3
Other
Accession IDs
less
MGI:2140539
References
more
  • Summaries
    All 39
    Gene Ontology 7
    Phenotypes 12
  • Earliest
    J:10021 Lai E, et al., Physical maps of the mouse and human immunoglobulin-like loci. Adv Immunol. 1989;46:1-59
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory