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Ttc41 Gene Detail
Summary
  • Symbol
    Ttc41
  • Name
    tetratricopeptide repeat domain 41
  • Synonyms
    BC030307, Gnn
  • Feature Type
    protein coding gene
  • IDs
    MGI:2387653
    NCBI Gene: 103220
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:86541675-86612708 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 43.07 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1871 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2387653
 protein coding gene Chr10:86541675-86612708 (+)
129S1/SvImJ MGP_129S1SvImJ_G0017613
 protein coding gene Chr10:87685599-87762401 (+)
A/J MGP_AJ_G0017592
 protein coding gene Chr10:84787879-84858723 (+)
AKR/J MGP_AKRJ_G0017551
 protein coding gene Chr10:87168295-87240566 (+)
BALB/cJ MGP_BALBcJ_G0017555
 protein coding gene Chr10:85049740-85121111 (+)
C3H/HeJ MGP_C3HHeJ_G0017378
 protein coding gene Chr10:87171576-87241773 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018012
 protein coding gene Chr10:90655583-90732095 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015695
 protein coding gene Chr10:80582042-80658412 (+)
CAST/EiJ MGP_CASTEiJ_G0016944
 protein coding gene Chr10:87055980-87132470 (+)
CBA/J MGP_CBAJ_G0017347
 protein coding gene Chr10:94420039-94500252 (+)
DBA/2J MGP_DBA2J_G0017453
 protein coding gene Chr10:83889951-83960979 (+)
FVB/NJ MGP_FVBNJ_G0017446
 protein coding gene Chr10:83154790-83225213 (+)
LP/J MGP_LPJ_G0017527
 protein coding gene Chr10:88377654-88456522 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017476
 protein coding gene Chr10:95992879-96073374 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018049
 protein coding gene Chr10:87017241-87090851 (+)
PWK/PhJ MGP_PWKPhJ_G0016725
 protein coding gene Chr10:83896103-83968305 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016513
 protein coding gene Chr10:85740072-85813456 (+)
WSB/EiJ MGP_WSBEiJ_G0017003
 protein coding gene Chr10:86973447-87048526 (+)



Homology
more
  • Human Ortholog
    TTC41P, tetratricopeptide repeat domain 41, pseudogene
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TTC41P, tetratricopeptide repeat domain 41, pseudogene
  • Synonyms
    GNN, GNNP
  • Links
    NCBI Gene ID: 253724
    UniProt: Q6P2S7

  • Chr Location
    12q23.3; chr12:103843749-103930211 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    739
  • Tissues
    9
  • cDNA Data
    11
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 103220 NCBI Gene Model | MGI Sequence Detail 71034 C57BL/6J ±  kb
transcript NM_001003910 RefSeq | MGI Sequence Detail 4365 ZRU/MplStud  
polypeptide Q692V3 UniProt | EBI | MGI Sequence Detail 1318 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    5 Sequences
  • InterPro Domains
    IPR051191 DDB1-CUL4-associated factor 12
    IPR007111 NACHT nucleoside triphosphatase
    IPR027417 P-loop containing nucleoside triphosphate hydrolase
    IPR011990 Tetratricopeptide-like helical domain superfamily
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 3
Other
Accession IDs
less
MGI:2143606, MGI:2143759
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory