4930403D09Rik Gene Detail

Summary

• Symbol
  4930403D09Rik
• Name
  RIKEN cDNA 4930403D09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2441677
  NCBI Gene: 319208
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:34249707-34258113 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 19.71 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  336 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2441677	lncRNA gene	Chr11:34249707-34258386 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002935	antisense lncRNA gene	Chr11:32634001-32642407 (+)
A/J	MGP_AJ_G0002912	antisense lncRNA gene	Chr11:31407986-31416392 (+)
AKR/J	MGP_AKRJ_G0002893	antisense lncRNA gene	Chr11:32373786-32382192 (+)
BALB/cJ	MGP_BALBcJ_G0002900	antisense lncRNA gene	Chr11:31582034-31590441 (+)
C3H/HeJ	MGP_C3HHeJ_G0002855	antisense lncRNA gene	Chr11:32323429-32331837 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003042	antisense lncRNA gene	Chr11:33672184-33680590 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002584	antisense lncRNA gene	Chr11:29896655-29905018 (+)
CAST/EiJ	MGP_CASTEiJ_G0002827	antisense lncRNA gene	Chr11:32436067-32444474 (+)
CBA/J	MGP_CBAJ_G0002852	antisense lncRNA gene	Chr11:35342700-35351103 (+)
DBA/2J	MGP_DBA2J_G0002859	antisense lncRNA gene	Chr11:31168608-31177016 (+)
FVB/NJ	MGP_FVBNJ_G0002878	antisense lncRNA gene	Chr11:31000575-31008980 (+)
LP/J	MGP_LPJ_G0002934	antisense lncRNA gene	Chr11:32899628-32908035 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002866	antisense lncRNA gene	Chr11:36233260-36241665 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003045	antisense lncRNA gene	Chr11:32532986-32541392 (+)
PWK/PhJ	MGP_PWKPhJ_G0002785	antisense lncRNA gene	Chr11:31361933-31370424 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002734	antisense lncRNA gene	Chr11:32265455-32273831 (+)
WSB/EiJ	MGP_WSBEiJ_G0002856	antisense lncRNA gene	Chr11:32169900-32178308 (+)

Homology

• Gene Tree
  4930403D09Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving 4930403D09Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000087122 (Evidence)
• NCBI Gene
  319208

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087122	Ensembl Gene Model | MGI Sequence Detail	8407	C57BL/6J
transcript	ENSMUST00000147359	Ensembl | MGI Sequence Detail	635	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930403D09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100922	Chr11:34249695-34249701 (+)	-9 bp
Tssr100923	Chr11:34249706-34249720 (+)	6 bp
Tssr100924	Chr11:34249736-34249755 (+)	39 bp