4932441J04Rik Gene Detail

Summary

• Symbol
  4932441J04Rik
• Name
  RIKEN cDNA 4932441J04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2441691
  NCBI Gene: 319216
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:57727426-57875261 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 31.11 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2939 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2441691	lncRNA gene	Chr5:57727424-57877543 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015600	unclassified non-coding RNA gene	Chr5:56854088-57011525 (-)
A/J	MGP_AJ_G0015576	unclassified non-coding RNA gene	Chr5:54764773-54904863 (-)
AKR/J	MGP_AKRJ_G0015540	unclassified non-coding RNA gene	Chr5:56555925-56696496 (-)
BALB/cJ	MGP_BALBcJ_G0015538	unclassified non-coding RNA gene	Chr5:55347341-55508451 (-)
C3H/HeJ	MGP_C3HHeJ_G0015360	unclassified non-coding RNA gene	Chr5:56841429-56982221 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015992	unclassified non-coding RNA gene	Chr5:59132012-59297897 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013727	unclassified non-coding RNA gene	Chr5:51573774-51706287 (-)
CAST/EiJ	MGP_CASTEiJ_G0014916	unclassified non-coding RNA gene	Chr5:55848903-55983734 (-)
CBA/J	MGP_CBAJ_G0015341	unclassified non-coding RNA gene	Chr5:61107354-61268178 (-)
DBA/2J	MGP_DBA2J_G0015435	unclassified non-coding RNA gene	Chr5:54816004-54963542 (-)
FVB/NJ	MGP_FVBNJ_G0015442	unclassified non-coding RNA gene	Chr5:54079837-54225315 (-)
LP/J	MGP_LPJ_G0015516	unclassified non-coding RNA gene	Chr5:57235326-57392641 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015465	unclassified non-coding RNA gene	Chr5:62802764-63005942 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016034	unclassified non-coding RNA gene	Chr5:56151496-56299999 (-)
PWK/PhJ	MGP_PWKPhJ_G0014701	unclassified non-coding RNA gene	Chr5:53862618-54006842 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014489	unclassified non-coding RNA gene	Chr5:55613412-55750751 (-)
WSB/EiJ	MGP_WSBEiJ_G0015020	unclassified non-coding RNA gene	Chr5:56291166-56457906 (-)

Homology

• Gene Tree
  4932441J04Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving 4932441J04Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000097216 (Evidence)
• NCBI Gene
  319216

Representative Sequences			Length	Strain/Species
genomic	319216	NCBI Gene Model | MGI Sequence Detail	147836	C57BL/6J
transcript	NR_015588	RefSeq | MGI Sequence Detail	726	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 26

  Phenotypes 17
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for 4932441J04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51039	Chr5:57876300-57876306 (-)	-1,042 bp
Tssr51038	Chr5:57774294-57774295 (-)	100,966 bp