C130036L24Rik Gene Detail

Summary

• Symbol
  C130036L24Rik
• Name
  RIKEN cDNA C130036L24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2441877
  NCBI Gene: 319336
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:86287306-86296229 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 43.94 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  266 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2441877	lncRNA gene	Chr1:86287296-86301513 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015105	unclassified non-coding RNA gene	Chr1:87613629-87631126 (+)
A/J	MGP_AJ_G0015078	unclassified non-coding RNA gene	Chr1:84369770-84384839 (+)
AKR/J	MGP_AKRJ_G0015041	unclassified non-coding RNA gene	Chr1:86834536-86850657 (+)
BALB/cJ	MGP_BALBcJ_G0015041	unclassified non-coding RNA gene	Chr1:84488855-84503789 (+)
C3H/HeJ	MGP_C3HHeJ_G0014864	unclassified non-coding RNA gene	Chr1:87067777-87082981 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015498	unclassified non-coding RNA gene	Chr1:90954386-90968474 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013244	unclassified non-coding RNA gene	Chr1:78864543-78867927 (+)
CAST/EiJ	MGP_CASTEiJ_G0014419	unclassified non-coding RNA gene	Chr1:86313850-86328192 (+)
CBA/J	MGP_CBAJ_G0014843	unclassified non-coding RNA gene	Chr1:93780503-93794716 (+)
DBA/2J	MGP_DBA2J_G0014936	unclassified non-coding RNA gene	Chr1:83678164-83692365 (+)
FVB/NJ	MGP_FVBNJ_G0014948	unclassified non-coding RNA gene	Chr1:82735796-82750304 (+)
LP/J	MGP_LPJ_G0015019	unclassified non-coding RNA gene	Chr1:88717896-88733635 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014975	unclassified non-coding RNA gene	Chr1:97048282-97063217 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015536	unclassified non-coding RNA gene	Chr1:86948837-86965660 (+)
PWK/PhJ	MGP_PWKPhJ_G0014211	unclassified non-coding RNA gene	Chr1:82965106-82979517 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014000	unclassified non-coding RNA gene	Chr1:85908113-85925625 (+)
WSB/EiJ	MGP_WSBEiJ_G0014523	unclassified non-coding RNA gene	Chr1:86593333-86608388 (+)

Homology

• Gene Tree
  C130036L24Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  34
• Chemically induced (other)
  1
• Gene trapped
  32
• Radiation induced
  1
• Genomic Mutations
  2 involving C130036L24Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  9

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000073627 (Evidence)
• NCBI Gene
  319336

Representative Sequences			Length	Strain/Species
genomic	319336	NCBI Gene Model | MGI Sequence Detail	8924	C57BL/6J
transcript	NR_015507	RefSeq | MGI Sequence Detail	1799	C57BL/6
polypeptide	Q3V3X5	UniProt | EBI | MGI Sequence Detail	166	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3642082

References

• Summaries
  All 22

  Phenotypes 9
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for C130036L24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7749	Chr1:86287275-86287312 (+)	-12 bp
Tssr7750	Chr1:86287360-86287414 (+)	81 bp