9630028B13Rik Gene Detail

Summary

• Symbol
  9630028B13Rik
• Name
  RIKEN cDNA 9630028B13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442281
  NCBI Gene: 319562
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:185161554-185174016 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 89.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  463 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442281	lncRNA gene	Chr1:185161552-185174016 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0002812	antisense lncRNA gene	Chr1:192167520-192181038 (-)
A/J	MGP_AJ_G0002789	antisense lncRNA gene	Chr1:184306772-184319087 (-)
AKR/J	MGP_AKRJ_G0002770	antisense lncRNA gene	Chr1:189737665-189750517 (-)
BALB/cJ	MGP_BALBcJ_G0002776	antisense lncRNA gene	Chr1:184948460-184960909 (-)
C3H/HeJ	MGP_C3HHeJ_G0002734	antisense lncRNA gene	Chr1:190607537-190619990 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0002918	antisense lncRNA gene	Chr1:198300485-198312945 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002465	antisense lncRNA gene	Chr1:175294687-175307564 (-)
CAST/EiJ	MGP_CASTEiJ_G0002706	antisense lncRNA gene	Chr1:190038295-190050763 (-)
CBA/J	MGP_CBAJ_G0002729	antisense lncRNA gene	Chr1:205692926-205707381 (-)
DBA/2J	MGP_DBA2J_G0002736	antisense lncRNA gene	Chr1:183065175-183077432 (-)
FVB/NJ	MGP_FVBNJ_G0002756	antisense lncRNA gene	Chr1:181166277-181178626 (-)
LP/J	MGP_LPJ_G0002812	antisense lncRNA gene	Chr1:193316576-193330173 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002746	antisense lncRNA gene	Chr1:212567169-212580521 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002923	antisense lncRNA gene	Chr1:189611404-189623870 (-)
PWK/PhJ	MGP_PWKPhJ_G0002664	antisense lncRNA gene	Chr1:182277149-182289776 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002614	antisense lncRNA gene	Chr1:188566598-188579017 (-)
WSB/EiJ	MGP_WSBEiJ_G0002735	antisense lncRNA gene	Chr1:189776161-189789404 (-)

Homology

• Gene Tree
  9630028B13Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  719
• Tissues
  3
• cDNA Data
  5
• Literature Summary
  4

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000051295 (Evidence)
• NCBI Gene
  319562

Representative Sequences			Length	Strain/Species
genomic	319562	NCBI Gene Model | MGI Sequence Detail	12463	C57BL/6J
transcript	NR_038006	RefSeq | MGI Sequence Detail	3406	C57BL/6
polypeptide	Q8BH25	UniProt | EBI | MGI Sequence Detail	160	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 13

  Developmental Gene Expression 4

  Phenotypes 1
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:314103 Ulmke PA, et al., Molecular Profiling Reveals Involvement of ESCO2 in Intermediate Progenitor Cell Maintenance in the Developing Mouse Cortex. Stem Cell Reports. 2021 Apr 13;16(4):968-984

TSS for 9630028B13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr15672	Chr1:185173938-185173958 (-)	68 bp
Tssr15671	Chr1:185173912-185173932 (-)	94 bp