BC024139 Gene Detail

Summary

• Symbol
  BC024139
• Name
  cDNA sequence BC024139
• Synonyms
  6230424I18Rik, MGC:37978

• Feature Type
  protein coding gene
• IDs
  MGI:2442591
  NCBI Gene: 271278
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr15:76003717-76010756 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 35.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  241 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442591	protein coding gene	Chr15:76003717-76010796 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0021976	protein coding gene	Chr15:76173774-76180853 (-)
A/J	MGP_AJ_G0021934	protein coding gene	Chr15:73403535-73410614 (-)
AKR/J	MGP_AKRJ_G0021917	protein coding gene	Chr15:75394165-75401246 (-)
BALB/cJ	MGP_BALBcJ_G0021943	protein coding gene	Chr15:73420911-73427990 (-)
C3H/HeJ	MGP_C3HHeJ_G0021715	protein coding gene	Chr15:75444984-75452063 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0022383	protein coding gene	Chr15:79013228-79020307 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0019912	protein coding gene	Chr15:70069562-70076614 (-)
CAST/EiJ	MGP_CASTEiJ_G0021234	protein coding gene	Chr15:76234011-76245223 (-)
CBA/J	MGP_CBAJ_G0021682	protein coding gene	Chr15:81526909-81533988 (-)
DBA/2J	MGP_DBA2J_G0021807	protein coding gene	Chr15:72933081-72940160 (-)
FVB/NJ	MGP_FVBNJ_G0021788	protein coding gene	Chr15:71985213-71992292 (-)
LP/J	MGP_LPJ_G0021878	protein coding gene	Chr15:76262913-76269992 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0021812	protein coding gene	Chr15:86830904-86838680 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0022403	protein coding gene	Chr15:75638722-75645801 (-)
PWK/PhJ	MGP_PWKPhJ_G0020975	protein coding gene	Chr15:73085513-73092595 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0020815	protein coding gene	Chr15:75361297-75368425 (-)
WSB/EiJ	MGP_WSBEiJ_G0021286	protein coding gene	Chr15:75723629-75730758 (-)

Homology

• MGI Vertebrate Homology
  BC024139 stringent orthology
  1 mouse;1 rat
  
• Gene Tree
  BC024139
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  23 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  3
• Radiation induced
  2
• Genomic Mutations
  5 involving BC024139
• Incidental Mutations
  Mutagenetix , APF , CvDC
• Find Mice (IMSR)
  31 strains or lines available

Expression

• Assay Results
  745
• Tissues
  6
• cDNA Data
  14
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  2
• UniProt
  6
• CCDS
  CCDS49643.1

• Ensembl
  ENSMUSG00000044361 (Evidence)
• NCBI Gene
  271278

Representative Sequences			Length	Strain/Species
genomic	271278	NCBI Gene Model | MGI Sequence Detail	7040	C57BL/6J
transcript	NM_001142968	RefSeq | MGI Sequence Detail	2656	C57BL/6
polypeptide	NP_001136440	RefSeq | MGI Sequence Detail	772	C57BL/6

Protein
Information

• UniProt
  6 Sequences
• InterPro Domains
  IPR003108 GAR domain
  IPR036534 GAR domain superfamily
  IPR018159 Spectrin/alpha-actinin

Molecular
Reagents

• All nucleic 14

  cDNA 14

  
  

  Microarray probesets 1

References

• Summaries
  All 36

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 23
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for BC024139:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr134918	Chr15:76010738-76010750 (-)	12 bp
Tssr134917	Chr15:76008849-76008864 (-)	1,899 bp