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Zcchc7 Gene Detail
Summary
  • Symbol
    Zcchc7
  • Name
    zinc finger, CCHC domain containing 7
  • Synonyms
    4930572I07Rik, D4Wsu132e
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442912
    NCBI Gene: 319885
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:44756556-44932215 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 23.57 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2720 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442912
 protein coding gene Chr4:44755877-44932215 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028236
 protein coding gene Chr4:42943882-43134440 (+)
A/J MGP_AJ_G0028193
 protein coding gene Chr4:41417515-41594333 (+)
AKR/J MGP_AKRJ_G0028145
 protein coding gene Chr4:42399309-42583398 (+)
BALB/cJ MGP_BALBcJ_G0028213
 protein coding gene Chr4:41501547-41679204 (+)
C3H/HeJ MGP_C3HHeJ_G0027935
 protein coding gene Chr4:43003262-43186207 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028654
 protein coding gene Chr4:44580563-44772966 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025964
 protein coding gene Chr4:38821737-38993473 (+)
CAST/EiJ MGP_CASTEiJ_G0027374
 protein coding gene Chr4:42527285-42732102 (+)
CBA/J MGP_CBAJ_G0027901
 protein coding gene Chr4:45946211-46143876 (+)
DBA/2J MGP_DBA2J_G0028050
 protein coding gene Chr4:41314751-41493140 (+)
FVB/NJ MGP_FVBNJ_G0028017
 protein coding gene Chr4:40541434-40716976 (+)
LP/J MGP_LPJ_G0028149
 protein coding gene Chr4:43011049-43196078 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028041
 protein coding gene Chr4:49108957-49312383 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028690
 protein coding gene Chr4:42611248-42792465 (+)
PWK/PhJ MGP_PWKPhJ_G0027098
 protein coding gene Chr4:41367430-41549030 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026927
 protein coding gene Chr4:42130785-42314232 (+)
WSB/EiJ MGP_WSBEiJ_G0027452
 protein coding gene Chr4:42480824-42673404 (+)



Homology
more
  • Human Ortholog
    ZCCHC7, zinc finger CCHC-type containing 7
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZCCHC7, zinc finger CCHC-type containing 7
  • Synonyms
    AIR1, HSPC086
  • Links
    NCBI Gene ID: 84186
    neXtProt AC: NX_Q8N3Z6
    UniProt: Q8N3Z6

  • Chr Location
    9p13.2; chr9:37120167-37358149 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    14
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    881
  • Tissues
    43
  • cDNA Data
    27
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 319885 NCBI Gene Model | MGI Sequence Detail 175660 C57BL/6J ±  kb
transcript NM_138590 RefSeq | MGI Sequence Detail 2545 ZRU/MplStud  
polypeptide B1AX39 UniProt | EBI | MGI Sequence Detail 541 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 29
    cDNA 27
    Primer pair 2

    Microarray probesets 6
Other
Accession IDs
less
MGD-MRK-35794, MGI:107328
References
more
  • Summaries
    All 36
    Developmental Gene Expression 3
    Gene Ontology 5
    Phenotypes 9
  • Earliest
    J:50869 Ko MSH, et al., Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Hum Mol Genet. 1998 Nov;7(12):1967-78
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory