About   Help   FAQ
A630001G21Rik Gene Detail
Summary
  • Symbol
    A630001G21Rik
  • Name
    RIKEN cDNA A630001G21 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443131
    NCBI Gene: 319997
  • Alliance
    gene page
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:85644804-85664377 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 43.75 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    686 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443131
 protein coding gene Chr1:85644804-85706364 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016234
 protein coding gene Chr1:86919039-86988666 (-)
A/J MGP_AJ_G0016215
 protein coding gene Chr1:83706724-83770454 (-)
AKR/J MGP_AKRJ_G0016176
 protein coding gene Chr1:86128316-86196904 (-)
BALB/cJ MGP_BALBcJ_G0016172
 protein coding gene Chr1:83832063-83895460 (-)
C3H/HeJ MGP_C3HHeJ_G0016000
 protein coding gene Chr1:86391729-86457795 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016628
 protein coding gene Chr1:90230118-90292287 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014350
 protein coding gene Chr1:78188281-78247933 (-)
CAST/EiJ MGP_CASTEiJ_G0015585
 protein coding gene Chr1:85623223-85685610 (-)
CBA/J MGP_CBAJ_G0015976
 protein coding gene Chr1:93052442-93115786 (-)
DBA/2J MGP_DBA2J_G0016078
 protein coding gene Chr1:83026189-83087781 (-)
FVB/NJ MGP_FVBNJ_G0016078
 protein coding gene Chr1:82072235-82132753 (-)
LP/J MGP_LPJ_G0016150
 protein coding gene Chr1:88027784-88094003 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016104
 protein coding gene Chr1:96341447-96406654 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016671
 protein coding gene Chr1:86252368-86317096 (-)
PWK/PhJ MGP_PWKPhJ_G0015372
 protein coding gene Chr1:82293757-82368834 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015152
 protein coding gene Chr1:85213905-85287786 (-)
WSB/EiJ MGP_WSBEiJ_G0015649
 protein coding gene Chr1:85912092-85979367 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    730
  • Tissues
    15
  • cDNA Data
    30
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 319997 NCBI Gene Model | MGI Sequence Detail 19574 C57BL/6J ±  kb
transcript NM_177055 RefSeq | MGI Sequence Detail 1936 C57BL/6  
polypeptide NP_796029 RefSeq | MGI Sequence Detail 229 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR004865 HSR domain
    IPR043563 Nuclear body protein Sp110/Sp140/Sp140L-like
Molecular
Reagents
less
  • All nucleic 30
    cDNA 30

    Microarray probesets 2
References
more
  • Summaries
    All 22
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 5
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory