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A330008L17Rik Gene Detail
Summary
  • Symbol
    A330008L17Rik
  • Name
    RIKEN cDNA A330008L17 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2443215
    NCBI Gene: 234624
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:100143306-100460070 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 49.57 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    9726 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443215
 lncRNA gene Chr8:100143274-100460070 (+)
129S1/SvImJ MGP_129S1SvImJ_G0007373
 lincRNA gene Chr8:101102308-101110332 (+)
A/J MGP_AJ_G0007370
 lincRNA gene Chr8:97150499-97158500 (+)
AKR/J MGP_AKRJ_G0007342
 lincRNA gene Chr8:99818482-100301421 (+)
BALB/cJ MGP_BALBcJ_G0007348
 lincRNA gene Chr8:97238648-97246673 (+)
C3H/HeJ MGP_C3HHeJ_G0007292
 lincRNA gene Chr8:100596319-100605232 (+)
C57BL/6NJ MGP_C57BL6NJ_G0007519
 lincRNA gene Chr8:104791016-104798828 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006712
 lincRNA gene Chr8:90869207-91177589 (+)
CAST/EiJ MGP_CASTEiJ_G0007194
 lincRNA gene Chr8:100122283-100528771 (+)
CBA/J MGP_CBAJ_G0007274
 lincRNA gene Chr8:108345742-108353751 (+)
DBA/2J MGP_DBA2J_G0007297
 lincRNA gene Chr8:96602965-96610917 (+)
FVB/NJ MGP_FVBNJ_G0007318
 lincRNA gene Chr8:95509622-95859835 (+)
LP/J MGP_LPJ_G0007378
 lincRNA gene Chr8:101219093-101227916 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0007294
 lincRNA gene Chr8:110920138-111325141 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0007521
 lincRNA gene Chr8:99978916-100342867 (+)
PWK/PhJ MGP_PWKPhJ_G0007135
 lincRNA gene Chr8:96023780-96031882 (+)
SPRET/EiJ MGP_SPRETEiJ_G0007043
 lincRNA gene Chr8:98834452-99188729 (+)
WSB/EiJ MGP_WSBEiJ_G0007254
 lincRNA gene Chr8:100494634-100503940 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    713
  • Tissues
    2
  • cDNA Data
    3
  • Literature Summary
    3
Sequences &
Gene Models
less
  • All Sequences
    29
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 234624 NCBI Gene Model | MGI Sequence Detail 316765 C57BL/6J ±  kb
transcript NR_132435 RefSeq | MGI Sequence Detail 2614 C57BL/6  
polypeptide Q8BHM4 UniProt | EBI | MGI Sequence Detail 157 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 5
    Genomic 2
    cDNA 3

    Microarray probesets 2
References
more
  • Summaries
    All 17
    Developmental Gene Expression 3
    Phenotypes 3
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory